User: amirsh6

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amirsh60
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Posts by amirsh6

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Biopython SearchIO is beautiful but its future unclear
... Any idea when/ if Biopython SearchIO will become non-experimental in upcoming Biopython releases? I love using it but always slightly worried about reproducibility. ...
python searchio biopython homology search written 3.5 years ago by amirsh60 • updated 3.3 years ago by Peter5.8k
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Discrepencies between RepeatMasker searches with de-novo and repeatmasker libs
... I am in the process of annotating a non-vertebrate genome assembly with TEs. I started with RepeatModeler to generate a library. Then I searched my assembly using RepeatMasker, once with the new library and again with -species eukaryota. The first (-lib) search has many more matches than the second, ...
transposable elemetns written 4.8 years ago by amirsh60

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