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3
votes
3
replies
4.2k
views
Tools to display mutations in a protein's structure
protein sequence
updated 4 weeks ago by ▴ 20 • written 9.4 years ago by ▴ 990
0
votes
1
reply
688
views
Convert CRAM to BAM in pysam
python pysam BAM CRAM
updated 10 months ago by 20k • written 10 months ago by ▴ 990
0
votes
0
replies
400
views
Good Primers on Ancestry Methods for Humans
ancestry snv human-genome
updated 10 months ago by 45k • written 10 months ago by ▴ 990
0
votes
0
replies
621
views
Database of Embryo-Lethal or Known Knockout Phenotype Genes in Rice
annotation database rice gene
2.5 years ago by sviatoslav.kendall ▴ 990
1
vote
2
replies
2.4k
views
Strange issue retrieving sequences from a local BLAST database made using a Uniprot proteome
blast protein sequence fasta uniprot
updated 3.6 years ago by 152k • written 3.6 years ago by ▴ 990
0
votes
0
replies
1.1k
views
Bulk downloads from CNGB
CNGB
updated 2.3 years ago by 45k • written 5.1 years ago by ▴ 990
6
votes
4
replies
6.0k
views
How can I run a Biopython qblast search targeting a specific set of organisms?
BLAST Biopython
updated 5.2 years ago by ▴ 650 • written 5.2 years ago by ▴ 990
10
votes
12
replies
5.6k
views
8 follow
Which Driver-Gene Detecting Software Supports hg38?
2020+ MutSig2CV MuSiC
updated 3.7 years ago by ▴ 340 • written 6.1 years ago by ▴ 990
1
vote
1
reply
1.5k
views
Can splice-site mutations be treated as gene knock-outs?
SNP sequencing
updated 7.4 years ago by 48k • written 7.4 years ago by ▴ 990
1
vote
1
reply
3.5k
views
In FACETS, what does the mafR value represent?
CNV
updated 8.0 years ago by ▴ 970 • written 9.0 years ago by ▴ 990
0
votes
0
replies
2.9k
views
Question about Copy-Number Data produced using Sequenza
R copy-number Sequenza
updated 8.1 years ago by 20 • written 8.3 years ago by ▴ 990
0
votes
0
replies
3.0k
views
Filter out Non-Diploid segments in FACETS data
sequencing R FACETS CNV
8.2 years ago by sviatoslav.kendall ▴ 990
0
votes
0
replies
2.0k
views
SNPEFF Sequence Ontology Terms that are equivalent to a Loss of Function
snp sequencing
updated 8.7 years ago by 20 • written 8.9 years ago by ▴ 990
0
votes
0
replies
2.6k
views
DNA Methylation: how do Percent Methylation values compare to PMR?
R sequencing Methylation
9.0 years ago by sviatoslav.kendall ▴ 990
0
votes
0
replies
1.1k
views
Tool for getting every CHROM_POS_REF_ALT that will produce specific point mutation
genome gene
9.3 years ago by sviatoslav.kendall ▴ 990
13
votes
13
replies
7.3k
views
How Successful are new Bioinformatics Software Companies?
business software SAAS
updated 9.3 years ago by ★ 2.1k • written 9.3 years ago by ▴ 990
8
votes
6
replies
4.0k
views
How can a gene exist on three different chromosomes!?!?
gene genome
updated 3.0 years ago by 45k • written 9.5 years ago by ▴ 990
4
votes
2
replies
2.4k
views
Phylogenic Analyses using non-sequential sequences
sequence
updated 3.0 years ago by 45k • written 9.5 years ago by ▴ 990
6
votes
4
replies
3.3k
views
Trouble renaming output files after running PHYLIP programs from a BASH script
PHYLIP sequence software-error
updated 3.0 years ago by 45k • written 9.6 years ago by ▴ 990
1
vote
1
reply
2.5k
views
TCGA miRNA data - is this an appropriate approach?
TCGA RNA-Seq miRNA
updated 3.2 years ago by 45k • written 10.4 years ago by ▴ 990
1
vote
1
reply
2.6k
views
Where can I find more Cancer Datasets for Validation purposes
TCGA ICGC
updated 3.2 years ago by 45k • written 10.4 years ago by ▴ 990
0
votes
0
replies
2.1k
views
Tool for finding inhibitory factors for a list of genes?
gene online-tools transcription-factors
updated 10.4 years ago by 20 • written 10.6 years ago by ▴ 990
2
votes
1
reply
3.8k
views
TCGA data looks different on ICGC
sequencing genome
updated 3.4 years ago by 45k • written 10.6 years ago by ▴ 990
22
votes
17
replies
5.7k
views
10 follow
How can I learn cluster computing?
genome next-gen RNA-Seq
updated 3.4 years ago by 45k • written 10.6 years ago by ▴ 990
4
votes
5
replies
4.4k
views
What is appropriate coverage/quality filter for GATK for germline variants?
sequencing Coverage genome GATK
updated 3.4 years ago by 45k • written 10.6 years ago by ▴ 990
8
votes
8
replies
7.7k
views
6 follow
What kind of distribution to you expect to see for RNA-Seq expression levels?
RNA-Seq
updated 3.7 years ago by 45k • written 11.0 years ago by ▴ 990
2
votes
2
replies
2.5k
views
Tool for visualizing proteins based on amino-acid structure?
sequence gene proteomics
updated 3.8 years ago by 45k • written 11.1 years ago by ▴ 990
14
votes
8
replies
4.2k
views
Physical Lab Notebook for Computational Work
Lab Record Notebook R Keeping
updated 3.8 years ago by 45k • written 11.1 years ago by ▴ 990
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