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questions
1
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3
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659
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Nebula 30x read length distribution
Illumina
nebula.WGS
30x
updated 18 months ago by
GenoMax
149k • written 18 months ago by
berndmann
▴ 10
3
votes
16
replies
2.4k
views
Simulate reads for positions in a vcf file
variant-calling
simulation
bam
vcf
updated 15 months ago by
Brian Bushnell
20k • written 19 months ago by
berndmann
▴ 10
3
votes
1
reply
904
views
Use bbmap reformat.sh to convert from paired fq files to a bam file
reformat.sh
bbmap
19 months ago by
berndmann
▴ 10
1
vote
20
replies
2.4k
views
randomreads.sh only produces reads for chr1 to chr7
randomreads.sh
bbmap
updated 19 months ago by
GenoMax
149k • written 19 months ago by
berndmann
▴ 10
0
votes
2
replies
1.0k
views
Chain file for Homo_sapiens_assembly38.fasta to liftover Nebula vcf
hg38
fasta
hg19
chainfile
20 months ago by
berndmann
▴ 10
0
votes
1
reply
1.2k
views
Low SNP Overlap with Michigan 1KG and TopMed reference panel
Michigan-Server
Phasing
TopMed
updated 10 months ago by
Ram
44k • written 21 months ago by
berndmann
▴ 10
0
votes
0
replies
579
views
Small overlap of 1KG Sample file with dbSNP and same sample from phased file
HaploTypeCaller
1KG
dbSNP
22 months ago by
berndmann
▴ 10
0
votes
4
replies
1.0k
views
Can't call subsampled bam file with GATK Haplotypecaller with --disable-tool-default-read-filters
ultra-low-coverage
GATK
HaplotypeCaller
updated 22 months ago by
Pierre Lindenbaum
165k • written 22 months ago by
berndmann
▴ 10
2
votes
8
replies
2.2k
views
High ref mismatch rate after liftOver from 23andme hg19 to hg38
liftOver
plink
23andme
bcftools-fixref
updated 19 months ago by
Ram
44k • written 2.1 years ago by
berndmann
▴ 10
1
vote
4
replies
1.9k
views
Convert plink format to genotype input format
genotype
plink
updated 19 months ago by
Ram
44k • written 2.2 years ago by
berndmann
▴ 10
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