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9
votes
15
replies
7.8k
views
Efficient way of calculating the number of mismatches between two sets of sequences please?
alignment genome sequence
updated 2.1 years ago by 43k • written 9.4 years ago by ▴ 360
0
votes
1
reply
890
views
Continuous variable prediction from a MultiOmics dataset?
MultiOmics
updated 3.6 years ago by 20 • written 3.8 years ago by ▴ 360
1
vote
2
replies
1.2k
views
[Should I used CAGE?]: gene set enrichment analysis on image analysis experimental values
gene Pathway Bioprocess
updated 5.2 years ago by 20 • written 6.9 years ago by ▴ 360
1
vote
5
replies
3.2k
views
GRCh38 Annotation for non coding RNA (e.g. miRNA)
genome R
updated 5.7 years ago by ▴ 670 • written 9.7 years ago by ▴ 360
1
vote
2
replies
1.9k
views
controls for amplicon data - Which one to use and how?
amplicon DNA-seq control
updated 22 months ago by 43k • written 9.0 years ago by ▴ 360
0
votes
1
reply
1.2k
views
Best current ways to find TSS please (even cell dependent ones)?
genome
6.4 years ago by Aurelie MLB ▴ 360
3
votes
5
replies
2.9k
views
Quick question: samtool idxstats and multiple mapping
sequencing alignment
updated 6.5 years ago by 104k • written 6.5 years ago by ▴ 360
1
vote
2
replies
1.7k
views
Ideal size of a library for miRNA ?
RNA-Seq
updated 21 months ago by 43k • written 8.2 years ago by ▴ 360
2
votes
2
replies
3.5k
views
DESeq2: why the independent filtering threshold would come back as NULL please?
RNA-Seq
updated 21 months ago by 43k • written 8.2 years ago by ▴ 360
11
votes
7
replies
4.7k
views
Sailfish TPM normalization: does it take into account the size the library?
RNA-Seq
updated 21 months ago by 43k • written 8.2 years ago by ▴ 360
2
votes
3
replies
2.6k
views
Best experimental/bioinfo protocol to genotype large insertions?
next-gen Assembly sequence alignment
updated 19 months ago by 43k • written 8.6 years ago by ▴ 360
4
votes
5
replies
1.5k
views
Reconstruct mRNA isoform sequences from RNAseq data (+ genome edition)
RNA-Seq
updated 15 months ago by 43k • written 8.9 years ago by ▴ 360
3
votes
7
replies
7.6k
views
How to link UCSC transcripts ids to protein ids using bioconductor ?
R genome gene sequence
updated 13 months ago by 43k • written 9.9 years ago by ▴ 360
19
votes
9
replies
2.8k
views
6 follow
RNA-seq: how big should be the library?
RNA-Seq
updated 21 months ago by 43k • written 9.0 years ago by ▴ 360
1
vote
2
replies
3.3k
views
DESeq2 with 2 factors: problem to fit the negative binomial and weird p-value distributions
DESeq2 RNA-Seq
updated 21 months ago by 43k • written 9.0 years ago by ▴ 360
22
votes
15
replies
12k
views
DESeq2 normalisation: is the size of the gene taken into account?
RNA-Seq
updated 17 months ago by 43k • written 9.0 years ago by ▴ 360
0
votes
2
replies
2.3k
views
Reporting alleles sequences for Amplicon sequencing after variant calling
DNA-seq
updated 16 months ago by 43k • written 9.1 years ago by ▴ 360
1
vote
15
replies
4.4k
views
Ultrafast alignment of short sequences to a genome (with up to 5 mismatches!)
genome alignment
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 360
3
votes
2
replies
3.3k
views
Does repeat masker remove all repeats or does it keep the first instance ?
genome
updated 3.1 years ago by 43k • written 9.5 years ago by ▴ 360
12
votes
2
replies
6.1k
views
How to find all miRNA locations in on GRch37 ?
miRNA Bioconductor genome
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 360
7
votes
2
replies
1.8k
views
What is in the UCSC/NCBI genomes please?
genome
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 360
1
vote
2
replies
3.0k
views
How to annotate splicing sites, ESEs and ESSs in a gene
genome sequence R gene
updated 2.5 years ago by 43k • written 9.8 years ago by ▴ 360
7
votes
16
replies
5.6k
views
In R bioconductor, how to combine DNAString views please ?
sequence R
updated 2.5 years ago by 43k • written 9.9 years ago by ▴ 360
1
vote
0
replies
2.1k
views
Is it possible to find the positions of mismatches if using mathPDict to align patterns to a sequence of reference ?
alignment R sequence
updated 2.5 years ago by 43k • written 9.9 years ago by ▴ 360
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