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Continuous variable prediction from a MultiOmics dataset?
MultiOmics
updated 20 months ago by 20 • written 22 months ago by ▴ 360
1
vote
2
replies
950
views
[Should I used CAGE?]: gene set enrichment analysis on image analysis experimental values
gene Pathway Bioprocess
updated 3.2 years ago by 20 • written 4.9 years ago by ▴ 360
1
vote
5
replies
2.6k
views
GRCh38 Annotation for non coding RNA (e.g. miRNA)
genome R
updated 3.8 years ago by ▴ 600 • written 7.8 years ago by ▴ 360
1
vote
2
replies
1.5k
views
controls for amplicon data - Which one to use and how?
DNA-seq amplicon control
updated 3.9 years ago by 20 • written 7.1 years ago by ▴ 360
0
votes
1
reply
957
views
Best current ways to find TSS please (even cell dependent ones)?
genome
4.4 years ago by Aurelie MLB ▴ 360
3
votes
5
replies
2.2k
views
Quick question: samtool idxstats and multiple mapping
sequencing alignment
updated 4.5 years ago by 101k • written 4.5 years ago by ▴ 360
1
vote
2
replies
1.4k
views
Ideal size of a library for miRNA ?
RNA-Seq
updated 6.3 years ago by ★ 2.2k • written 6.3 years ago by ▴ 360
2
votes
2
replies
3.0k
views
DESeq2: why the independent filtering threshold would come back as NULL please?
RNA-Seq
6.3 years ago by Aurelie MLB ▴ 360
11
votes
7
replies
3.5k
views
Sailfish TPM normalization: does it take into account the size the library?
RNA-Seq
updated 6.3 years ago by 5.2k • written 6.3 years ago by ▴ 360
2
votes
3
replies
2.2k
views
Best experimental/bioinfo protocol to genotype large insertions?
next-gen sequence alignment Assembly
6.7 years ago by Aurelie MLB ▴ 360
4
votes
5
replies
1.2k
views
Reconstruct mRNA isoform sequences from RNAseq data (+ genome edition)
RNA-Seq
updated 7.0 years ago by 101k • written 7.0 years ago by ▴ 360
3
votes
7
replies
6.0k
views
How to link UCSC transcripts ids to protein ids using bioconductor ?
genome sequence gene Forum R
updated 7 months ago by 36k • written 8.0 years ago by ▴ 360
19
votes
9
replies
1.8k
views
6 follow
RNA-seq: how big should be the library?
RNA-Seq
updated 7.1 years ago by ★ 2.2k • written 7.1 years ago by ▴ 360
1
vote
2
replies
2.8k
views
DESeq2 with 2 factors: problem to fit the negative binomial and weird p-value distributions
DESeq2 RNA-Seq
updated 4 months ago by 36k • written 7.1 years ago by ▴ 360
22
votes
15
replies
11k
views
DESeq2 normalisation: is the size of the gene taken into account?
RNA-Seq
updated 7.1 years ago by ★ 2.4k • written 7.1 years ago by ▴ 360
0
votes
2
replies
1.8k
views
Reporting alleles sequences for Amplicon sequencing after variant calling
sequence sequencing DNA-seq
7.1 years ago by Aurelie MLB ▴ 360
8
votes
14
replies
5.8k
views
Efficient way of calculating the number of mismatches between two sets of sequences please?
alignment genome sequence
updated 11 weeks ago by 36k • written 7.5 years ago by ▴ 360
1
vote
15
replies
3.6k
views
Ultrafast alignment of short sequences to a genome (with up to 5 mismatches!)
genome alignment
updated 4 months ago by 36k • written 7.7 years ago by ▴ 360
3
votes
2
replies
2.7k
views
Does repeat masker remove all repeats or does it keep the first instance ?
genome
updated 13 months ago by 36k • written 7.6 years ago by ▴ 360
12
votes
2
replies
5.4k
views
How to find all miRNA locations in on GRch37 ?
miRNA Bioconductor genome
updated 4 months ago by 36k • written 7.6 years ago by ▴ 360
7
votes
2
replies
1.5k
views
What is in the UCSC/NCBI genomes please?
genome
updated 4 months ago by 36k • written 7.6 years ago by ▴ 360
1
vote
2
replies
2.5k
views
How to annotate splicing sites, ESEs and ESSs in a gene
genome sequence R gene
updated 6 months ago by 36k • written 7.9 years ago by ▴ 360
7
votes
16
replies
4.2k
views
In R bioconductor, how to combine DNAString views please ?
sequence R
updated 7 months ago by 36k • written 7.9 years ago by ▴ 360
1
vote
0
replies
1.8k
views
Is it possible to find the positions of mismatches if using mathPDict to align patterns to a sequence of reference ?
alignment R sequence
updated 7 months ago by 36k • written 8.0 years ago by ▴ 360
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