User: DK

gravatar for DK
DK70
Reputation:
70
Status:
Trusted
Location:
Canada
Last seen:
1 day, 1 hour ago
Joined:
4 years, 4 months ago
Email:
d***************@gmail.com

Posts by DK

<prev • 106 results • page 1 of 11 • next >
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Comment: C: SPAdes output with assembling warning
... Thank you very much! Could you please suggest what QC package would be best for such data? ...
written 4 days ago by DK70
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Comment: C: SPAdes output with assembling warning
... The total size of the bacteriophage genome is generally about 40,000 bp. And, yes, I did not do the QC, I wanted to see how the reads perform without QC. Do you think QC will improve the results? Pleas let me know of your suggestions. ...
written 5 days ago by DK70
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Comment: C: SPAdes output with assembling warning
... Thank you very much for your response! I looked at the result and I understand that good assembly should have less number of contigs and high N50 value. When looking at the results of the Kmers I found that K77 have the least number of contigs with high N50 like this: K77 mer: Assembly ...
written 5 days ago by DK70
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SPAdes output with assembling warning
... Dear Friends, I ran SPAdes on an ion torrent bam file with single-reads of a bacteriophage sample using the command line: spades.py --iontorrent -k 21,33,55,77,99,127 --only-assembler -s IonXpress.bam -o spades-out --careful --mismatch-correction After the run was finished, there were error c ...
sequence-reads spades assembling iontorrent written 5 days ago by DK70
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ubam to fastq?
... Dear Friends, Could you please suggest how to convert Ion-torrent ubam files to fastq? I have not found an effective answer on how to do this. What I am looking to do is to perform assembly of reads to get contigs. I would really appreciate. Thanks much! DK ...
fastq ubam sequencing written 6 days ago by DK70 • updated 6 days ago by Pierre Lindenbaum113k
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Comment: A: How to plot a matrix with numbers in the matrix colored using ggplot2 or other w
... Thank you everyone for your informative suggestions and solutions which made this post a success :-). ...
written 11 weeks ago by DK70
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Comment: C: How to plot a matrix with numbers in the matrix colored using ggplot2 or other w
... Yes, I made the plot: :) ![enter image description here][1] [1]: https://s8.postimg.cc/voi2oh1s5/Screen_Shot_2018-08-02_at_6.59.42_PM.png ...
written 11 weeks ago by DK70
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Comment: C: How to plot a matrix with numbers in the matrix colored using ggplot2 or other w
... Thanks! it works :) ...
written 11 weeks ago by DK70
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Comment: C: How to plot a matrix with numbers in the matrix colored using ggplot2 or other w
... Thanks much! I have come to a point where I am getting the plot; however, I dont see the numbers in the matrix: ![enter image description here][1] And, my code is: ![enter image description here][2] [1]: https://s8.postimg.cc/75bftwdad/Screen_Shot_2018-08-02_at_6.07.53_PM.png [2]: https://s8. ...
written 11 weeks ago by DK70
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Comment: C: How to plot a matrix with numbers in the matrix colored using ggplot2 or other w
... I want to write, or at least copy-paste, but the platform am working on does not allow me to copy-paste, otherwise I will have to write the whole code here from scratch. Can you see if there is any error that is causing problem? Thanks. ...
written 11 weeks ago by DK70

Latest awards to DK

Centurion 11 weeks ago, created 100 posts.
Supporter 7 months ago, voted at least 25 times.

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