Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
Showing :
questions
21
votes
5
replies
9.9k
views
GATK_HaplotypeCaller: <NON_REF> .
GATK
updated 11 months ago by
Moe
▴ 10 • written 9.2 years ago by
iraun
6.2k
0
votes
0
replies
350
views
How to detect tumor-specific splicing aberrations
splicing
13 months ago by
iraun
6.2k
1
vote
0
replies
730
views
Custom gene alleles + Kallisto for proxy Allele-specific expression analysis
kallisto
3.9 years ago by
iraun
6.2k
3
votes
8
replies
2.1k
views
Kallisto: Impact of chosen reference transcriptome on the resulting TPMs
RNA-Seq
kallisto
updated 4.0 years ago by
Biostar
20 • written 4.2 years ago by
iraun
6.2k
2
votes
9
replies
3.9k
views
HISAT2 and Stringtie: difference in Stringtie results when using pre-built indexes or creating new ones in HISAT2
hisat2
7.0 years ago by
iraun
6.2k
6
votes
5
replies
5.3k
views
scaffolding denovo contigs to genome
scaffolding
denovo
updated 2.3 years ago by
Ram
43k • written 9.7 years ago by
iraun
6.2k
1
vote
1
reply
3.1k
views
bwa.kit: run-bwamem or bwa mem
bwa
7.2 years ago by
iraun
6.2k
6
votes
2
replies
6.1k
views
samtools v1.3: AD, ADF and ADR fields.
samtools
sam
format
7.5 years ago by
iraun
6.2k
2
votes
4
replies
4.3k
views
How to verify the information stored in a GFF file
GFF
Genome Annotation
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
iraun
6.2k
2
votes
2
replies
2.9k
views
svtyper tool: ValueError: mate not found
lumpy
svtyper
structural-variants
updated 21 months ago by
Ram
43k • written 9.0 years ago by
iraun
6.2k
9
votes
12
replies
6.4k
views
6 follow
VCF_format, a point in REF/ALT columns
vcf-format
updated 19 months ago by
Ram
43k • written 9.9 years ago by
iraun
6.2k
3
votes
5
replies
2.9k
views
Remove reads from bam file whose mate has been already filtered out
bam
samtools
updated 15 months ago by
Ram
43k • written 8.9 years ago by
iraun
6.2k
2
votes
1
reply
13k
views
GATK: HaplotypeCaller gVCF and multisample
GATK
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
iraun
6.2k
2
votes
4
replies
2.7k
views
vcf-consensus with more than one alternative alleles
vcf-consensus
vcf
updated 9.0 years ago by
Biostar
20 • written 9.9 years ago by
iraun
6.2k
3
votes
4
replies
6.5k
views
GATK: RealignerTargetCreator and IndelRealigner related questions
GATK
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
iraun
6.2k
3
votes
1
reply
2.4k
views
Get completely overlapping features
bedtools
intersect
updated 13 months ago by
Ram
43k • written 9.4 years ago by
iraun
6.2k
6
votes
17
replies
4.5k
views
Extract sequences from fasta NOT present in list of IDs
fasta
updated 19 months ago by
Ram
43k • written 9.4 years ago by
iraun
6.2k
4
votes
7
replies
7.4k
views
How to create chain file to change genome coordinates from one genome version to another
remap
liftover
chain-format
updated 2.1 years ago by
Ram
43k • written 9.6 years ago by
iraun
6.2k
2
votes
2
replies
2.9k
views
Question about number of reads within intervals
bedtools
coverage
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
iraun
6.2k
1
vote
6
replies
5.0k
views
About GFF validation
GFF
Genome
annotation
updated 3.1 years ago by
Ram
43k • written 9.5 years ago by
iraun
6.2k
6
votes
3
replies
2.5k
views
How can I know if snp is inside a protein domain?
proteindomain
SNP
updated 3.1 years ago by
Ram
43k • written 9.5 years ago by
iraun
6.2k
1
vote
4
replies
4.9k
views
Reorder issue when combining heatmap with dendrogram
R
ggplot2
heatmap
updated 3.1 years ago by
Ram
43k • written 9.5 years ago by
iraun
6.2k
1
vote
1
reply
2.0k
views
Satsuma output format to chain format
Satsuma
MSA
chain_format
updated 3.1 years ago by
Ram
43k • written 9.5 years ago by
iraun
6.2k
2
votes
2
replies
4.7k
views
Pindel: RPL structural variation type
pindel
updated 2.3 years ago by
Ram
43k • written 9.6 years ago by
iraun
6.2k
0
votes
0
replies
2.0k
views
SGA: get the coordinates of contig scaffolding
sga
scaffolding
updated 9.6 years ago by
Biostar
20 • written 9.7 years ago by
iraun
6.2k
1
vote
3
replies
2.2k
views
How to pick simulation parameters for the RNASeqReadSimulator
RNA-Seq
ReadSimulator
updated 9.7 years ago by
Istvan Albert
100k • written 9.7 years ago by
iraun
6.2k
2
votes
1
reply
2.6k
views
check the variations incorporated to consensus fasta by vcf-consensus
vcf
vcf-consensus
updated 2.4 years ago by
Ram
43k • written 9.9 years ago by
iraun
6.2k
27 results • Page
1 of 1
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6