User: lawalakinyanju

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Posts by lawalakinyanju

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Comment: C: Recode VCF file according to ancestral alleles (AA)
... I made a post here, could you also help me answer it. Thank you very much. https://www.biostars.org/p/171731/ ...
written 4.9 years ago by lawalakinyanju0
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Comment: C: Ancestral Allele for the Genus Gallus
... Yes please. I don't have an idea how to implement this. ...
written 4.9 years ago by lawalakinyanju0
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Ancestral Allele for the Genus Gallus
... Hi guys, I want to generate an ancestral allele from Gallus varius. I have a .vcf file for both the varius and domestic mapped against Galgal4. It is expected that at the same position in both .vcf file, the REF allele will be the same. To proceed, I want to work only on the ALT field. If at the sa ...
genome assembly sequence snp sequencing written 4.9 years ago by lawalakinyanju0 • updated 4.7 years ago by Biostar ♦♦ 20
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Command to generate CNV statistics
... Hi guys, I have generated CNV files for all the chromosome of my samples using CNVnator but I need a command to generate the statistics of all the deletion (Homo and Het) as well as duplication and plot it in a normal distribution. Thank you guys ...
genome R next-gen sequence snp written 6.5 years ago by lawalakinyanju0 • updated 6.4 years ago by Biostar ♦♦ 20

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