User: Woa

gravatar for Woa
Woa2.8k
Reputation:
2,790
Status:
Trusted
Location:
United States
Last seen:
6 days, 16 hours ago
Joined:
10 years, 1 month ago
Email:
w***************@gmail.com

Posts by Woa

<prev • 285 results • page 2 of 29 • next >
2
votes
0
answers
2.5k
views
0
answers
Blog: Lior Pachter's Blog
... I wonder why I didn't come across Lior Pachter's Blog earlier https://liorpachter.wordpress.com/ There was a big war going on with two network biology papers: https://liorpachter.wordpress.com/2014/02/10/the-network-nonsense-of-albert-laszlo-barabasi/ https://liorpachter.wordpress.com/2014/02/11 ...
blog written 5.7 years ago by Woa2.8k
0
votes
1
answer
3.9k
views
1
answers
Comment: C: How to get protein expression data from MaxQuant
... Check the original paper. I think its iBAQ intensity they used because its  Absolute Quantification unlike LFQ(label free quantification) , which is relative quantification.  ...
written 5.9 years ago by Woa2.8k
1
vote
1
answer
3.9k
views
1
answers
Answer: A: How to get protein expression data from MaxQuant
... Check the files containing  iBAQ intensity data in it, the iBAQ intensity is the measure for  Protein abundance or expression ...
written 5.9 years ago by Woa2.8k
0
votes
1
answer
3.7k
views
1
answers
Comment: C: Center of mass of a Protein
... The x,y,z co-ords of the Center  of mass can be found out using the x,y,z co-ords of all the heavy atoms of the protein using that equation. That equation provides the CM as a position vector. Use this formula to invidually calculate the X,Y,Z co-ord of the CM: http://formulas.tutorvista.com/physics ...
written 6.0 years ago by Woa2.8k
0
votes
1
answer
3.7k
views
1
answers
Answer: A: Center of mass of a Protein
... For finding the CM taking uniform mass for each heavy atom ( non hydrogen atom) is OK. Which equation you're talking about?  ...
written 6.0 years ago by Woa2.8k
0
votes
2
answers
2.7k
views
2
answers
Answer: A: Standard methods for filtering enriched GO terms based on similarity scores?
... See if ReviGo can solve your problem: http://revigo.irb.hr/ ...
written 6.0 years ago by Woa2.8k
3
votes
1
answer
1.8k
views
1
answers
Answer: A: BINGO plugin in cytoscape giving empty output
... I've not used it for a while, but be sure your Identifiers(Ensemble I guess in this case) can be mapped to the ontology files. It is better to update the ontology and annotation files in Bingo before using it.  ...
written 6.2 years ago by Woa2.8k
0
votes
2
answers
3.3k
views
2
answers
Answer: A: how to analysis technical replicates data?
... You can use technical replicates to measure the variance(equivalent to noise ) of your data, and above the observed variance, you consider everything as signal. Often fold-change cut-off to ascertain differential expression is determined this way: See this paper and related papers from the same gro ...
written 6.2 years ago by Woa2.8k
2
votes
1
answer
1.7k
views
1
answers
Answer: A: Question about gene ontology annotation: When analysing DE genes do we look for
... Check this thread: https://www.biostars.org/p/100123/ ...
written 6.2 years ago by Woa2.8k
3
votes
1
answer
2.2k
views
1
answers
Answer: A: Computing PAM and Blosum Substitution Matrices
... https://web.archive.org/web/20130726133541/http://biorecipes.com/Dayhoff/code.html http://www.perlmonks.org/?node_id=1049813 http://books.google.com/books?id=C88KrD4enWkC&pg=PA68&hl=en#v=onepage&q&f=false http://books.google.com/books?id=bvY21DGa1OwC&pg=PA96&source=gbs_toc ...
written 6.4 years ago by Woa2.8k

Latest awards to Woa

Epic Question 28 days ago, created a question with more than 10,000 views. For Genbank,Ncbi Refseq Or Uniprot Protein Sequences
Epic Question 5 months ago, created a question with more than 10,000 views. For Genbank,Ncbi Refseq Or Uniprot Protein Sequences
Appreciated 5 months ago, created a post with more than 5 votes. For A: Translation Of Est Sequences To Protein
Great Question 11 months ago, created a question with more than 5,000 views. For Genbank,Ncbi Refseq Or Uniprot Protein Sequences
Great Question 11 months ago, created a question with more than 5,000 views. For Go Terms Redundancy Remover
Popular Question 11 months ago, created a question with more than 1,000 views. For Refseq Error: Insufficient Same-Species Transcript Support
Teacher 14 months ago, created an answer with at least 3 up-votes. For A: State Of Biostar - Future Directions (January 2013)
Popular Question 15 months ago, created a question with more than 1,000 views. For Finding The Source Article For Springer Images
Appreciated 17 months ago, created a post with more than 5 votes. For A: Translation Of Est Sequences To Protein
Great Question 17 months ago, created a question with more than 5,000 views. For Go Terms Redundancy Remover
Great Question 17 months ago, created a question with more than 5,000 views. For How Many Human Pathways Exist In Kegg Database?
Popular Question 19 months ago, created a question with more than 1,000 views. For Lior Pachter's Blog
Popular Question 21 months ago, created a question with more than 1,000 views. For Lior Pachter's Blog
Great Question 21 months ago, created a question with more than 5,000 views. For Refseq Mrna To Cds Sequence
Great Question 2.0 years ago, created a question with more than 5,000 views. For Genbank,Ncbi Refseq Or Uniprot Protein Sequences
Popular Question 2.3 years ago, created a question with more than 1,000 views. For Lior Pachter's Blog
Great Question 2.5 years ago, created a question with more than 5,000 views. For How To Calculate Fold Change And Its Significance In Quantitative Proteomics
Appreciated 2.9 years ago, created a post with more than 5 votes. For A: Translation Of Est Sequences To Protein
Great Question 2.9 years ago, created a question with more than 5,000 views. For Refseq Mrna To Cds Sequence
Great Question 2.9 years ago, created a question with more than 5,000 views. For How To Calculate Fold Change And Its Significance In Quantitative Proteomics
Popular Question 3.1 years ago, created a question with more than 1,000 views. For Problem Fetching Genomic Sequence From Ddbj
Popular Question 3.1 years ago, created a question with more than 1,000 views. For Lior Pachter's Blog
Teacher 3.2 years ago, created an answer with at least 3 up-votes. For A: State Of Biostar - Future Directions (January 2013)
Popular Question 3.4 years ago, created a question with more than 1,000 views. For Go Terms Redundancy Remover
Popular Question 3.4 years ago, created a question with more than 1,000 views. For Gene Ontology Like Term Clustering

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2166 users visited in the last hour
_