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Comment: C: GATK MarkDuplicates output and bam
5.7 years ago by bioguy24 ▴ 230
2
votes
5
replies
3.7k
views
GATK MarkDuplicates output and bam
GATK MarkDuplicates
updated 5.7 years ago by 16k • written 5.7 years ago by ▴ 230
0
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0
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2.8k
views
Comment: C: multithread support for gatk
5.7 years ago by bioguy24 ▴ 230
0
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0
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2.8k
views
Comment: C: multithread support for gatk
5.7 years ago by bioguy24 ▴ 230
3
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4
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2.8k
views
multithread support for gatk
gatk bqsr
5.7 years ago by bioguy24 ▴ 230
0
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0
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4.0k
views
Comment: C: using bash variable in picard MarkDuplicates command
updated 5.8 years ago by 35k • written 5.8 years ago by ▴ 230
6
votes
6
replies
4.0k
views
using bash variable in picard MarkDuplicates command
ngs picard
updated 5.8 years ago by 35k • written 5.8 years ago by ▴ 230
0
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1
reply
1.5k
views
Comment: C: illumina data analysis with bwa mem
5.8 years ago by bioguy24 ▴ 230
1
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3
replies
1.5k
views
illumina data analysis with bwa mem
bwa mem
updated 5.8 years ago by 104k • written 5.8 years ago by ▴ 230
1
vote
0
replies
2.6k
views
Comment: C: bcftools split and filter variants in vcf
6.2 years ago by bioguy24 ▴ 230
5
votes
2
replies
2.6k
views
bcftools split and filter variants in vcf
ngs bcftools
updated 6.2 years ago by 87k • written 6.2 years ago by ▴ 230
1
vote
3
replies
5.4k
views
bedtools coverage bed
NGS bedtools
updated 6.3 years ago by 35k • written 6.3 years ago by ▴ 230
0
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0
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1.4k
views
Comment: C: NGS variant prioritization tools/script
6.3 years ago by bioguy24 ▴ 230
0
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1
reply
1.4k
views
Comment: C: NGS variant prioritization tools/script
6.3 years ago by bioguy24 ▴ 230
0
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1
reply
1.4k
views
Comment: C: NGS variant prioritization tools/script
6.3 years ago by bioguy24 ▴ 230
2
votes
6
replies
1.4k
views
NGS variant prioritization tools/script
NGS
updated 6.3 years ago by 141k • written 6.3 years ago by ▴ 230
2
votes
6
replies
2.2k
views
add coordinates to line of output extracted from vcf
genotype vcf
6.4 years ago by bioguy24 ▴ 230
0
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0
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2.2k
views
Comment: A: add coordinates to line of output extracted from vcf
6.4 years ago by bioguy24 ▴ 230
0
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1
reply
2.2k
views
Comment: C: add coordinates to line of output extracted from vcf
6.4 years ago by bioguy24 ▴ 230
0
votes
1
reply
1.2k
views
integrate pharmGKB data with annovar
ngs
updated 6.6 years ago by 87k • written 6.6 years ago by ▴ 230
1
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0
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6.0k
views
Comment: C: calculate average target coverage from bam file
6.6 years ago by bioguy24 ▴ 230
4
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3
replies
6.0k
views
calculate average target coverage from bam file
ngs
updated 6.6 years ago by 7.3k • written 6.6 years ago by ▴ 230
0
votes
1
reply
2.3k
views
IGV pileup not showing any reads at any position in bam
NGS
6.8 years ago by bioguy24 ▴ 230
0
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0
replies
1.4k
views
Comment: C: search a large dbsnp file using another most efficiently
6.8 years ago by bioguy24 ▴ 230
3
votes
4
replies
1.4k
views
search a large dbsnp file using another most efficiently
ngs
6.8 years ago by bioguy24 ▴ 230
0
votes
0
replies
3.1k
views
Comment: C: adding custom INFO tag to vcf
6.9 years ago by bioguy24 ▴ 230
3
votes
2
replies
3.1k
views
adding custom INFO tag to vcf
NGS vcf
updated 6.9 years ago by 161k • written 6.9 years ago by ▴ 230
0
votes
0
replies
1.6k
views
Comment: C: hg19 transcript mapping or exon overlap
6.9 years ago by bioguy24 ▴ 230
6
votes
5
replies
1.6k
views
hg19 transcript mapping or exon overlap
NGS
updated 6.9 years ago by ▴ 10 • written 6.9 years ago by ▴ 230
0
votes
0
replies
1.3k
views
Comment: C: bash repeat file names if in directory after executing NGS tools
6.9 years ago by bioguy24 ▴ 230
0
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1
reply
1.3k
views
Comment: C: bash repeat file names if in directory after executing NGS tools
7.1 years ago by bioguy24 ▴ 230
2
votes
4
replies
1.3k
views
bash repeat file names if in directory after executing NGS tools
NGS
7.1 years ago by bioguy24 ▴ 230
1
vote
1
reply
915
views
associate a variant with a mutation in hg19
ngs
updated 7.1 years ago by ★ 2.8k • written 7.1 years ago by ▴ 230
0
votes
0
replies
1.9k
views
Comment: C: add undefined annotations from vcf files
7.2 years ago by bioguy24 ▴ 230
3
votes
3
replies
1.9k
views
add undefined annotations from vcf files
bcftools
7.2 years ago by bioguy24 ▴ 230
0
votes
0
replies
1.9k
views
Comment: A: add undefined annotations from vcf files
7.2 years ago by bioguy24 ▴ 230
0
votes
1
reply
3.0k
views
Comment: C: Annovar Check Version Database
7.2 years ago by bioguy24 ▴ 230
0
votes
1
reply
3.0k
views
Answer: A: Annovar Check Version Database
7.2 years ago by bioguy24 ▴ 230
0
votes
1
reply
1.7k
views
Bash to match and store numerical prefix to update files
ngs bash
7.2 years ago by bioguy24 ▴ 230
6
votes
6
replies
5.0k
views
Calculate forward and reverse strand reads from bam
ngs
updated 7.2 years ago by ★ 3.8k • written 7.2 years ago by ▴ 230
0
votes
1
reply
2.7k
views
Comment: C: lift coordinates mapping to_alt chromosomes in hg38
7.3 years ago by bioguy24 ▴ 230
5
votes
8
replies
2.7k
views
lift coordinates mapping to_alt chromosomes in hg38
ngs bed
updated 13 months ago by 43k • written 7.3 years ago by ▴ 230
0
votes
1
reply
2.7k
views
Comment: C: lift coordinates mapping to_alt chromosomes in hg38
7.3 years ago by bioguy24 ▴ 230
0
votes
1
reply
2.7k
views
Comment: C: lift coordinates mapping to_alt chromosomes in hg38
7.3 years ago by bioguy24 ▴ 230
0
votes
0
replies
4.5k
views
Comment: C: convert hg38 variant calls to hg19
7.3 years ago by bioguy24 ▴ 230
0
votes
0
replies
4.5k
views
Comment: C: convert hg38 variant calls to hg19
7.3 years ago by bioguy24 ▴ 230
0
votes
1
reply
4.5k
views
Comment: C: convert hg38 variant calls to hg19
7.3 years ago by bioguy24 ▴ 230
0
votes
2
replies
4.5k
views
Comment: C: convert hg38 variant calls to hg19
7.3 years ago by bioguy24 ▴ 230
3
votes
7
replies
4.5k
views
convert hg38 variant calls to hg19
ngs
updated 7.3 years ago by 161k • written 7.3 years ago by ▴ 230
8
votes
4
replies
5.0k
views
genes that map to hg38 coordinates
ngs
7.3 years ago by bioguy24 ▴ 230
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