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2
votes
2
replies
2.8k
views
comparing variants between two VCF files
VCF SV BED
updated 4.2 years ago by 23k • written 4.2 years ago by ▴ 140
0
votes
0
replies
4.2k
views
Comment: Comment: Downloading all runs using fastq-dump
4.4 years ago by BDK_compbio ▴ 140
0
votes
1
reply
4.2k
views
Comment: Comment: Downloading all runs using fastq-dump
4.4 years ago by BDK_compbio ▴ 140
0
votes
6
replies
4.2k
views
Downloading all runs using fastq-dump
fastq-dump SRAtoolkit
updated 4.4 years ago by ▴ 90 • written 4.5 years ago by ▴ 140
0
votes
0
replies
2.0k
views
grouping in EdgeR
EdgeR RNA-SEQ
4.5 years ago by BDK_compbio ▴ 140
3
votes
1
reply
3.6k
views
Running IsoSeq pipeline
PacBio IsoSeq
updated 5.0 years ago by 20 • written 7.0 years ago by ▴ 140
0
votes
0
replies
825
views
Extract Info from chromosome locations
Chromosome gene
5.5 years ago by BDK_compbio ▴ 140
2
votes
3
replies
3.5k
views
Whole Genome Alignment for plant genomes
alignment WGA
updated 5.5 years ago by ▴ 20 • written 9.2 years ago by ▴ 140
7
votes
7
replies
3.7k
views
CD-HIT Clustering evaluation
CD-HIT Clustering RNA-Seq sequencing
updated 4.1 years ago by • 0 • written 5.7 years ago by ▴ 140
0
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1
reply
3.7k
views
Comment: C: CD-HIT Clustering evaluation
5.7 years ago by BDK_compbio ▴ 140
0
votes
0
replies
1.5k
views
Comment: C: Download all isoforms
5.7 years ago by BDK_compbio ▴ 140
0
votes
0
replies
1.5k
views
Comment: C: Download all isoforms
5.7 years ago by BDK_compbio ▴ 140
0
votes
4
replies
1.5k
views
Download all isoforms
isoform sequence
5.7 years ago by BDK_compbio ▴ 140
0
votes
0
replies
3.7k
views
Comment: C: CD-HIT Clustering evaluation
5.7 years ago by BDK_compbio ▴ 140
0
votes
0
replies
3.7k
views
Comment: C: CD-HIT Clustering evaluation
5.7 years ago by BDK_compbio ▴ 140
16
votes
19
replies
14k
views
8 follow
Mismatch and Indel statistics from BAM/SAM file
SAM BAM Indel
updated 6.9 years ago by ▴ 260 • written 8.5 years ago by ▴ 140
0
votes
1
reply
183k
views
Comment: C: Blast - Formatting Output
6.9 years ago by BDK_compbio ▴ 140
1
vote
0
replies
1.7k
views
sequence alignment using edlib c++ library
cpp alignment
updated 2.5 years ago by 45k • written 7.3 years ago by ▴ 140
0
votes
0
replies
1.4k
views
Running DSK for multiple k values
k-mer
7.4 years ago by BDK_compbio ▴ 140
0
votes
0
replies
1.3k
views
Running k-mer counting tool DSK with multiple k values
sequence k-mer
7.5 years ago by BDK_compbio ▴ 140
0
votes
0
replies
1.5k
views
Comment: C: Consensus by aligning and extending the sequences
8.2 years ago by BDK_compbio ▴ 140
0
votes
2
replies
1.5k
views
Consensus by aligning and extending the sequences
fasta msa alignment
updated 8.2 years ago by 35k • written 8.2 years ago by ▴ 140
0
votes
0
replies
14k
views
Comment: C: Mismatch and Indel statistics from BAM/SAM file
8.2 years ago by BDK_compbio ▴ 140
0
votes
0
replies
14k
views
Comment: C: Mismatch and Indel statistics from BAM/SAM file
8.2 years ago by BDK_compbio ▴ 140
0
votes
0
replies
14k
views
Comment: C: Mismatch and Indel statistics from BAM/SAM file
updated 8.2 years ago by 154k • written 8.2 years ago by ▴ 140
1
vote
1
reply
3.0k
views
Mismatch and Indel rate in alignment
alignment sam bam
updated 8.2 years ago by ▴ 730 • written 8.2 years ago by ▴ 140
0
votes
1
reply
14k
views
Comment: C: Mismatch and Indel statistics from BAM/SAM file
8.2 years ago by BDK_compbio ▴ 140
0
votes
1
reply
14k
views
Comment: C: Mismatch and Indel statistics from BAM/SAM file
8.2 years ago by BDK_compbio ▴ 140
0
votes
0
replies
2.3k
views
Comment: C: Finding conserved non-coding sequences
8.3 years ago by BDK_compbio ▴ 140
0
votes
0
replies
2.6k
views
Comment: C: Finding Ultraconserved elements between human and zebrafish
8.3 years ago by BDK_compbio ▴ 140
0
votes
1
reply
14k
views
Comment: C: Mismatch and Indel statistics from BAM/SAM file
8.5 years ago by BDK_compbio ▴ 140
2
votes
1
reply
6.4k
views
Extract the mapped contig sequences from SAM/BAM file
samtools bwa BAM SAM
updated 8.7 years ago by ▴ 290 • written 8.7 years ago by ▴ 140
3
votes
8
replies
18k
views
Tophat Error : Couldn't build bowtie index with err = 1
RNA-Seq bowtie tophat
updated 3.4 years ago by 45k • written 10.8 years ago by ▴ 140
0
votes
0
replies
7.5k
views
Comment: Comment: Protein Sequence Clustering (CD-HIT vs BLASTClust + Problems in BlastClust)
updated 3.1 years ago by 45k • written 10.3 years ago by ▴ 140
0
votes
0
replies
7.5k
views
Answer: Answer: Protein Sequence Clustering (CD-HIT vs BLASTClust + Problems in BlastClust)
updated 3.1 years ago by 45k • written 10.3 years ago by ▴ 140
0
votes
4
replies
7.5k
views
Protein Sequence Clustering (CD-HIT vs BLASTClust + Problems in BlastClust)
BlastClust Clustering blast CD-HIT
updated 3.1 years ago by 45k • written 10.3 years ago by ▴ 140
0
votes
1
reply
9.9k
views
Comment: Comment: cufflink and cuffmerge error
updated 3.6 years ago by 45k • written 10.8 years ago by ▴ 140
0
votes
1
reply
9.9k
views
Comment: Comment: cufflink and cuffmerge error
updated 3.6 years ago by 45k • written 10.8 years ago by ▴ 140
0
votes
0
replies
4.0k
views
Comment: Comment: Sequence Alignment Visualization
updated 3.6 years ago by 45k • written 10.8 years ago by ▴ 140
0
votes
1
reply
4.0k
views
Comment: Comment: Sequence Alignment Visualization
updated 3.6 years ago by 45k • written 10.8 years ago by ▴ 140
0
votes
1
reply
18k
views
Comment: Comment: Tophat Error : Couldn't build bowtie index with err = 1
updated 3.6 years ago by 45k • written 10.8 years ago by ▴ 140
2
votes
6
replies
4.0k
views
Sequence Alignment Visualization
alignment sequence
updated 3.6 years ago by 45k • written 10.9 years ago by ▴ 140
0
votes
1
reply
4.0k
views
Comment: Comment: Sequence Alignment Visualization
updated 3.6 years ago by 45k • written 10.9 years ago by ▴ 140
1
vote
0
replies
4.6k
views
Answer: Answer: clustering and assembly
updated 3.7 years ago by 45k • written 10.9 years ago by ▴ 140
0
votes
1
reply
11k
views
Comment: Comment: Tophat with Bowtie2 long index
updated 3.9 years ago by 45k • written 11.2 years ago by ▴ 140
0
votes
0
replies
11k
views
Comment: C: Tophat with Bowtie2 long index
11.2 years ago by BDK_compbio ▴ 140
0
votes
1
reply
11k
views
Comment: Comment: Tophat with Bowtie2 long index
updated 3.9 years ago by 45k • written 11.2 years ago by ▴ 140
2
votes
16
replies
11k
views
Tophat with Bowtie2 long index
tophat bowtie
updated 3.9 years ago by 45k • written 11.3 years ago by ▴ 140
0
votes
0
replies
11k
views
Comment: C: Tophat with Bowtie2 long index
11.3 years ago by BDK_compbio ▴ 140
0
votes
0
replies
11k
views
Comment: C: Tophat with Bowtie2 long index
11.3 years ago by BDK_compbio ▴ 140
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