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2
votes
2
replies
1.7k
views
comparing variants between two VCF files
VCF SV BED
updated 2.6 years ago by 22k • written 2.6 years ago by ▴ 140
0
votes
6
replies
3.0k
views
Downloading all runs using fastq-dump
fastq-dump SRAtoolkit
updated 2.9 years ago by ▴ 90 • written 2.9 years ago by ▴ 140
0
votes
0
replies
1.5k
views
grouping in EdgeR
EdgeR RNA-SEQ
3.0 years ago by BDK_compbio ▴ 140
3
votes
1
reply
3.0k
views
Running IsoSeq pipeline
PacBio IsoSeq
updated 3.5 years ago by 20 • written 5.5 years ago by ▴ 140
0
votes
0
replies
608
views
Extract Info from chromosome locations
Chromosome gene
4.0 years ago by BDK_compbio ▴ 140
2
votes
3
replies
2.9k
views
Whole Genome Alignment for plant genomes
alignment WGA
updated 4.0 years ago by ▴ 20 • written 7.7 years ago by ▴ 140
7
votes
7
replies
2.4k
views
CD-HIT Clustering evaluation
CD-HIT Clustering RNA-Seq sequencing
updated 2.5 years ago by • 0 • written 4.1 years ago by ▴ 140
0
votes
4
replies
920
views
Download all isoforms
isoform sequence
4.1 years ago by BDK_compbio ▴ 140
16
votes
19
replies
11k
views
8 follow
Mismatch and Indel statistics from BAM/SAM file
SAM BAM Indel
updated 5.4 years ago by ▴ 250 • written 7.0 years ago by ▴ 140
1
vote
0
replies
1.3k
views
sequence alignment using edlib c++ library
cpp alignment
updated 11 months ago by 43k • written 5.7 years ago by ▴ 140
0
votes
0
replies
1.2k
views
Running DSK for multiple k values
k-mer
5.8 years ago by BDK_compbio ▴ 140
0
votes
0
replies
1.1k
views
Running k-mer counting tool DSK with multiple k values
sequence k-mer
5.9 years ago by BDK_compbio ▴ 140
0
votes
2
replies
1.1k
views
Consensus by aligning and extending the sequences
fasta msa alignment
updated 6.6 years ago by 35k • written 6.6 years ago by ▴ 140
1
vote
1
reply
2.6k
views
Mismatch and Indel rate in alignment
alignment sam bam
updated 6.7 years ago by ▴ 660 • written 6.7 years ago by ▴ 140
2
votes
1
reply
5.8k
views
Extract the mapped contig sequences from SAM/BAM file
samtools bwa BAM SAM
updated 7.1 years ago by ▴ 290 • written 7.1 years ago by ▴ 140
3
votes
8
replies
17k
views
Tophat Error : Couldn't build bowtie index with err = 1
RNA-Seq bowtie tophat
updated 22 months ago by 43k • written 9.3 years ago by ▴ 140
0
votes
4
replies
5.8k
views
Protein Sequence Clustering (CD-HIT vs BLASTClust + Problems in BlastClust)
BlastClust Clustering blast CD-HIT
updated 18 months ago by 43k • written 8.7 years ago by ▴ 140
2
votes
6
replies
3.1k
views
Sequence Alignment Visualization
alignment sequence
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 140
2
votes
16
replies
10k
views
Tophat with Bowtie2 long index
tophat bowtie
updated 2.3 years ago by 43k • written 9.8 years ago by ▴ 140
5
votes
13
replies
8.5k
views
cufflink and cuffmerge error
cufflink cuffmerge
updated 2.1 years ago by 43k • written 9.8 years ago by ▴ 140
1
vote
3
replies
2.3k
views
BWA cufflink error
cufflinks BWA
updated 2.5 years ago by 43k • written 9.8 years ago by ▴ 140
3
votes
2
replies
2.5k
views
RNA-Seq analysis and expression level
transcriptome-assembly RNA-seq
updated 2.5 years ago by 43k • written 9.8 years ago by ▴ 140
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