User: dp0b

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dp0b30
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19 hours ago
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4 years, 2 months ago
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Posts by dp0b

<prev • 23 results • page 1 of 3 • next >
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Comment: C: CM manhattan plot in R without default title
... Thanks for your help! At least I know it requires a bit more than I thought I was missing! ...
written 6 days ago by dp0b30
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CM manhattan plot in R without default title
... Hi, I want to plot a multi track manhattan and was using cmplot. However, I wish the final plot not to have the title manhattan plot at the top. Does any one no how I can edit it from the default? I have tried title=null, title= ' ', and changing the parameters par(mar=c(5,3,2,2)+0.1) Any suggestio ...
cmplot R manhattan written 6 days ago by dp0b30 • updated 6 days ago by Bastien Hervé1.8k
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Benjamini+ Hochberg multiple testing p.adjust R
... Hi, Im just trying to get my head around Benjamini + Hochberg multiple testing using the p.adjust approach in R. So is the BH mutliple testing option (pval *no of tests)/rank ? I have a dummy dataset and bonferroni multiple testing works as should pvals = c(2.335810e-07, 4.820826e-07, 4.820 ...
R p values multiple testing p.adjust written 10 weeks ago by dp0b30 • updated 10 weeks ago by Collin590
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Comment: C: Bin chromosome every 1kb and get average value
... Seriously love this code,edit it for max,min,average values.Different distance. Works so fast too. Honestly thank you! ...
written 5 months ago by dp0b30
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Comment: C: Bin chromosome every 1kb and get average value
... Got it!!Thank you!!! ...
written 5 months ago by dp0b30
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Comment: C: Bin chromosome every 1kb and get average value
... Thank you! Last question now I swear, piping that screen to an output file, the usual > output.txt after the code remains empty also tried |tee. Dont want to edit the script as its way above my capabilities! ...
written 5 months ago by dp0b30
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Comment: C: Bin chromosome every 1kb and get average value
... Thanks so much but getting the following error when I try it. Any ideas? Error: near line 1: table T already exists Error: near line 1502: cannot commit - no transaction is active ...
written 5 months ago by dp0b30
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Bin chromosome every 1kb and get average value
... Hi, I have a large file of each chromosome for sequence data and I want to get the average score in 1kb bins? Is there an easy way to do to this? chr1 123 127 1890 chr1 208 210 90 chr1 215 220 50 chr1 225 230 100 chr1 250 300 800 I have tried bedtools, it will create the win ...
genome mean binning sequence chromosome written 5 months ago by dp0b30 • updated 4 months ago by Biostar ♦♦ 20
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Gemma weights widv
... Hi, I am enquiring about gemmas -widv option. I was hoping to use it to weight bulls for a gwas analysis. I was just wondering has anyone used this option and what did they base their weights on? Reliability, effective record contribution etc? I understand that a high weight represents high resid ...
gemma cattle gwas written 8 months ago by dp0b30
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Comment: C: Gwas non normally distributed-continous or categorical trait
... Thanks for you help,Ill have a look but preference is a mixed model that fits the grm ...
written 10 months ago by dp0b30

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Popular Question 5 months ago, created a question with more than 1,000 views. For Calculate LogR ratio and BAF from X and Y intensities
Popular Question 17 months ago, created a question with more than 1,000 views. For Calculate LogR ratio and BAF from X and Y intensities

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