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11k
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Comment: C: First time using maker
5.8 years ago by Juke34 9.3k
0
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1
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11k
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Comment: C: First time using maker
5.9 years ago by Juke34 9.3k
0
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0
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2.4k
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Comment: C: Negative value in "phase" line of a gff3 file.What does it mean?
5.9 years ago by Juke34 9.3k
0
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1
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38k
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Comment: C: Which Bioinformatic Friendly Pipeline Building Framework?
updated 5.9 years ago by 45k • written 9.8 years ago by 9.3k
2
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1
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12k
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Answer: A: Training Augustus for Maker
5.9 years ago by Juke34 9.3k
0
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1
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5.1k
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Comment: C: replace gene names in gff file
5.9 years ago by Juke34 9.3k
1
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0
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14k
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Comment: C: Create de novo repeat library
5.9 years ago by Juke34 9.3k
1
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0
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3.5k
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Answer: A: Alternatives to RepeatModeler / nseg install fail
5.9 years ago by Juke34 9.3k
0
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0
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3.5k
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Comment: C: Alternatives to RepeatModeler / nseg install fail
5.9 years ago by Juke34 9.3k
13
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0
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16k
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Answer: A: Trinity strand specific: RF or FR
updated 5.9 years ago by 45k • written 9.9 years ago by 9.3k
4
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1
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2.4k
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Answer: A: Errors in file embl
5.9 years ago by Juke34 9.3k
1
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0
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3.5k
views
Answer: A: Alternatives to RepeatModeler / nseg install fail
5.9 years ago by Juke34 9.3k
1
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1
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5.1k
views
Answer: A: replace gene names in gff file
5.9 years ago by Juke34 9.3k
0
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0
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5.1k
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Comment: Comment: replace gene names in gff file
2.8 years ago by Juke34 9.3k
2
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0
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6.1k
views
Comment: C: De novo genome assembly strategy
updated 5.9 years ago by 45k • written 10.0 years ago by 9.3k
0
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1
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6.2k
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Answer: C: changing ID in an existing GFF3 file
5.9 years ago by Juke34 9.3k
0
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1
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1.8k
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Answer: A: intersecting two GFF3 missing data from the second file
5.9 years ago by Juke34 9.3k
1
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1
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2.8k
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Comment: C: Sequence identity percentage (again)
updated 5.9 years ago by 45k • written 10.0 years ago by 9.3k
1
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1
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2.8k
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Answer: A: BED reference for Pombe
updated 5.9 years ago by 45k • written 10.0 years ago by 9.3k
4
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1
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6.9k
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Answer: A: How to align a protein set to a genome?
updated 5.9 years ago by 45k • written 10.0 years ago by 9.3k
1
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0
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2.6k
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Answer: A: de novo transcriptome annotation steps
6.0 years ago by Juke34 9.3k
1
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0
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3.9k
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Comment: C: Duplicated CDS start/stop entries in GFF-file
6.0 years ago by Juke34 9.3k
1
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1
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3.9k
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Answer: A: Duplicated CDS start/stop entries in GFF-file
6.0 years ago by Juke34 9.3k
8
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1
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10k
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Answer: Answer: Script for getting summary statistic of any genome using GTF or GFF3 ?
updated 3.2 years ago by 45k • written 10.1 years ago by 9.3k
3
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0
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7.3k
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Answer: A: How to add the start and stop position information to a gff file?
6.0 years ago by Juke34 9.3k
1
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3
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7.9k
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Answer: Answer: Maker Gff3 file issues
3.6 years ago by Juke34 9.3k
1
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0
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1.7k
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Comment: C: How to calculate the number of functional proteins in GFF3 file
6.0 years ago by Juke34 9.3k
4
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2
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14k
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Answer: A: How to extract fasta sequences from assembled transcripts generated by Stringtie
6.0 years ago by Juke34 9.3k
6
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1
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13k
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Answer: Answer: How can I easily remove overlapping transcripts, keeping only longest transcript
2.8 years ago by Juke34 9.3k
9
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2
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15k
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Answer: Answer: How to get proteins from GFF file resulted from MAKER annotation
2.8 years ago by Juke34 9.3k
2
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0
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9.1k
views
Answer: A: Analysis gff3 file
6.0 years ago by Juke34 9.3k
0
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0
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9.1k
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Comment: C: Analysis gff3 file
6.0 years ago by Juke34 9.3k
0
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0
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3.3k
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Comment: C: GFF3 converter/parser multiple tRNAs with the same name/ID
updated 6.0 years ago by 45k • written 10.0 years ago by 9.3k
1
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1
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3.3k
views
Answer: A: GFF3 converter/parser multiple tRNAs with the same name/ID
updated 6.0 years ago by 45k • written 10.0 years ago by 9.3k
0
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1
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3.9k
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Answer: A: dn/ds ratio for somatic mutation
updated 6.0 years ago by 45k • written 10.0 years ago by 9.3k
1
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1
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8.0k
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Answer: A: should stop codon be counted as part of CDS
6.0 years ago by Juke34 9.3k
0
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0
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6.4k
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Answer: A: MAKER command maker2zff .ann and .dna files are empty
6.0 years ago by Juke34 9.3k
0
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1
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1.8k
views
Comment: C: intersecting two GFF3 missing data from the second file
6.0 years ago by Juke34 9.3k
0
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0
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9.5k
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Comment: C: 10x Supernova de novo assembly
6.0 years ago by Juke34 9.3k
1
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1
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6.6k
views
Comment: C: Converting an output de-novo transcriptome assembled with Trinity to a .gff3 fil
6.0 years ago by Juke34 9.3k
1
vote
0
replies
809
views
Answer: A: Similarity based annotation methods
updated 6.0 years ago by 35k • written 6.0 years ago by 9.3k
1
vote
1
reply
4.0k
views
Comment: C: Augustus and SNAP training in Maker-p pipeline
6.0 years ago by Juke34 9.3k
2
votes
0
replies
2.6k
views
Answer: A: Extract genes sequence from .gb file
6.0 years ago by Juke34 9.3k
2
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0
replies
3.7k
views
Comment: C: gff3 header delimiter space or a tab
6.0 years ago by Juke34 9.3k
0
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0
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1.5k
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Comment: C: Where to find .ace format description
6.0 years ago by Juke34 9.3k
3
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4
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1.5k
views
Where to find .ace format description
alignment
updated 6.0 years ago by ★ 3.3k • written 6.0 years ago by 9.3k
2
votes
0
replies
977
views
Answer: A: Relate CDS annotation to parent gene
6.0 years ago by Juke34 9.3k
1
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0
replies
2.1k
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Comment: C: Which software is suitable for protein prediction from whole eukaryotic genomes?
6.0 years ago by Juke34 9.3k
1
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0
replies
3.5k
views
Comment: C: What is in your opinion the current state-of-the-art sequencing platform for gen
6.0 years ago by Juke34 9.3k
1
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0
replies
3.5k
views
Comment: C: What is in your opinion the current state-of-the-art sequencing platform for gen
6.0 years ago by Juke34 9.3k
1,001 results • Page 13 of 21
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