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Forum: Orientation of PE reads a review of --fr --ff and --rf meanings
RNA-Seq
updated 2.5 years ago by 45k • written 7.1 years ago by 9.3k
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Comment: C: Orientation of PE reads a review of --fr --ff and --rf meanings
6.3 years ago by Juke34 9.3k
1
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1
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19k
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Comment: C: Orientation of PE reads a review of --fr --ff and --rf meanings
6.3 years ago by Juke34 9.3k
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0
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5.9k
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Answer: A: Adding CDS features to Gff3 file
6.3 years ago by Juke34 9.3k
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0
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2.5k
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Comment: C: Augustus output (GFF file) to Anvi`o
6.3 years ago by Juke34 9.3k
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0
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1.5k
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Comment: C: BRAKER miss some genes despite of RNA-Seq evindence
6.3 years ago by Juke34 9.3k
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0
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1.7k
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Comment: C: How to get the number of reads for a set of coordinates from a bam file.
updated 6.4 years ago by 90k • written 6.4 years ago by 9.3k
1
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0
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7.9k
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Answer: A: Gene feature information missing in Stringtie merged assembly
6.4 years ago by Juke34 9.3k
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0
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2.7k
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Comment: C: How to make AGP file with gap sequence?
6.4 years ago by Juke34 9.3k
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0
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18k
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Comment: C: How To Merge Gff Files
6.4 years ago by Juke34 9.3k
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0
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3.7k
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Comment: C: remove UTR annotations from gff
6.4 years ago by Juke34 9.3k
1
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0
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6.7k
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Comment: C: repeatmasker species setting
6.4 years ago by Juke34 9.3k
0
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1
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6.7k
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Comment: C: repeatmasker species setting
6.4 years ago by Juke34 9.3k
1
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2
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6.7k
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Answer: A: repeatmasker species setting
6.4 years ago by Juke34 9.3k
1
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0
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4.6k
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Comment: C: Pipeline transposable elements
6.5 years ago by Juke34 9.3k
0
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0
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2.4k
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Comment: C: Errors in file embl
6.6 years ago by Juke34 9.3k
1
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0
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5.4k
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Comment: Comment: Assembler for only nanopore data
updated 2.2 years ago by 154k • written 6.6 years ago by 9.3k
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0
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1.8k
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Comment: C: Command for counting gene model after each round of MAKER
6.6 years ago by Juke34 9.3k
0
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0
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1.5k
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Comment: C: Gene clustering with OrthoMCL
6.6 years ago by Juke34 9.3k
0
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0
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1.8k
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Comment: C: HiSAT2 RNAseq alignment low + stranded data predicted to be unstranded
6.6 years ago by Juke34 9.3k
0
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1
reply
2.4k
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Comment: C: Errors in file embl
6.6 years ago by Juke34 9.3k
1
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1
reply
5.5k
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Comment: C: Best strategy for gene annotation for de novo genome assembly without RNA-seq da
6.6 years ago by Juke34 9.3k
0
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1
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2.4k
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Comment: C: Errors in file embl
6.6 years ago by Juke34 9.3k
0
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0
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3.5k
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Answer: A: Convert Braker2 gff3 to EMBL flat file for ENA submission
6.6 years ago by Juke34 9.3k
0
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0
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3.5k
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Comment: C: Convert Braker2 gff3 to EMBL flat file for ENA submission
6.6 years ago by Juke34 9.3k
0
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0
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3.5k
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Comment: C: Convert Braker2 gff3 to EMBL flat file for ENA submission
6.6 years ago by Juke34 9.3k
0
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1
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2.4k
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Comment: C: Errors in file embl
6.6 years ago by Juke34 9.3k
2
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1
reply
3.3k
views
Answer: A: StringTie strandness of library in dUTP protocol
6.6 years ago by Juke34 9.3k
1
vote
2
replies
5.5k
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Answer: A: Best strategy for gene annotation for de novo genome assembly without RNA-seq da
6.6 years ago by Juke34 9.3k
1
vote
0
replies
2.9k
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Comment: C: Gene Count from GFF3 file
6.6 years ago by Juke34 9.3k
3
votes
1
reply
2.1k
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Answer: C: How to define several regions in GFF3 file?
6.6 years ago by Juke34 9.3k
1
vote
0
replies
2.8k
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Answer: A: Directional Strand related settings for RNA-seq Analysis Software
6.6 years ago by Juke34 9.3k
1
vote
0
replies
3.4k
views
Answer: A: Tool for Phage/Virus gene prediction and annotation
6.6 years ago by Juke34 9.3k
0
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0
replies
2.4k
views
Comment: C: Diploid genome gene annotation
6.6 years ago by Juke34 9.3k
1
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1
reply
2.4k
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Comment: C: Diploid genome gene annotation
6.6 years ago by Juke34 9.3k
1
vote
1
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2.4k
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Comment: C: Diploid genome gene annotation
6.6 years ago by Juke34 9.3k
0
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0
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1.3k
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Answer: A: combine assemble transcripts in both genome-guided and de novo modes
6.7 years ago by Juke34 9.3k
2
votes
2
replies
2.2k
views
Tool: GUESSmyLT guess the library type of your RNA-seq data (orientation, strandness)
rna-seq sequencing
updated 2.4 years ago by 45k • written 6.7 years ago by 9.3k
1
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0
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5.5k
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Comment: C: MEGAN6 and Daa files from DIAMOND
6.7 years ago by Juke34 9.3k
0
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0
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2.2k
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Comment: C: GUESSmyLT guess the library type of your RNA-seq data (orientation, strandness)
6.7 years ago by Juke34 9.3k
2
votes
0
replies
2.4k
views
Answer: A: JGI databases vs GenBank
6.7 years ago by Juke34 9.3k
0
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0
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1.2k
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Comment: C: Uploading of Genome to NCBI with unplaced scaffolds.
6.7 years ago by Juke34 9.3k
1
vote
1
reply
2.5k
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Comment: C: EBI submission and AGP ?
6.7 years ago by Juke34 9.3k
2
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1
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2.5k
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Comment: C: EBI submission and AGP ?
6.7 years ago by Juke34 9.3k
2
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0
replies
1.3k
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Comment: C: Do you know some scripts to plot MAKER annotation results?
6.7 years ago by Juke34 9.3k
0
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0
replies
4.8k
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Comment: C: Documentation on RefSeq gff3 columns
6.7 years ago by Juke34 9.3k
0
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0
replies
2.5k
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Comment: C: IGB won't open .gff file.
6.7 years ago by Juke34 9.3k
0
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1
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2.5k
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Comment: C: IGB won't open .gff file.
6.7 years ago by Juke34 9.3k
0
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1
reply
2.5k
views
Comment: C: IGB won't open .gff file.
6.7 years ago by Juke34 9.3k
0
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0
replies
3.7k
views
Comment: C: Mapping transcripts to genome
6.7 years ago by Juke34 9.3k
1,001 results • Page 15 of 21
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