User: James Estevez

gravatar for James Estevez
Reputation:
90
Status:
New User
Location:
Tacoma, WA
Website:
http://jamesestevez.com
Last seen:
6 years, 6 months ago
Joined:
8 years ago
Email:
j************@gmail.com

Posts by James Estevez

<prev • 13 results • page 1 of 2 • next >
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Answer: A: Ways To Programmatically Determine Whole Genome Completion Dates, Genomic Type,
... Regarding (1), my first guess would be to try the complete microbial genome project page, which contains the release date. Obviously not eutils, but it's a (kludgy) start. ...
written 7.2 years ago by James Estevez90
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Comment: C: Programmatic Access To The Carbohydrate-Active Enzymes Database (Www.Cazy.Org)?
... Rough script to do so is here: http://gist.github.com/1386797 ...
written 7.2 years ago by James Estevez90
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Comment: C: Programmatic Access To The Carbohydrate-Active Enzymes Database (Www.Cazy.Org)?
... Rough script to do so is here: gist.github.com/1386797 ...
written 7.2 years ago by James Estevez90
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Comment: C: Programmatic Access To The Carbohydrate-Active Enzymes Database (Www.Cazy.Org)?
... Rough script to do so is here ...
written 7.2 years ago by James Estevez90
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Answer: A: Programmatic Access To The Carbohydrate-Active Enzymes Database (Www.Cazy.Org)?
... Chalk this one up to reinventing the wheel. There is a webservice available via the CAZymes Analysis Toolkit (Park et al.): Obtaining data from the CAZy database The information content of each CAZy family is directly extracted from its HTML pages and populated into the local database. The HTML pag ...
written 7.2 years ago by James Estevez90
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Answer: A: Comparing Pubmed And Google Scholar
... I tend to use both in different ways. I use Google Scholar to interface with my library's databases and to follow reverse citations and related articles. When I want to capture citation information with Zotero I'll generally use Google Scholar's link to the Pubmed version, as it is generally much cl ...
written 7.5 years ago by James Estevez90
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Programmatic Access To The Carbohydrate-Active Enzymes Database (Www.Cazy.Org)?
... I'd like to use their database to perform a comparative analysis, but there doesn't seem to be any way to access it via flat file or some sort of REST or SOAP interface. I'm interested in the data in genome pages like this one, but I'd rather not wget and parse all that HTML (Although it seems well ...
parsing written 7.5 years ago by James Estevez90 • updated 6.1 years ago by Alexander Viborg10
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Comment: C: Calling Python Script From Bash Console While Using Gnu Parallel
... @NPalopoli: Not sure I understand; are you iterating over lists of FASTA files and function arguments within the script itself? ...
written 7.5 years ago by James Estevez90
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Comment: C: Recommend Your Favorite Introductory "R In Bioinformatics" Books And Resources
... +1 for Adler's R in a Nutshell which I have found to be very helpful for getting to grips with R, especially data munging. ...
written 7.5 years ago by James Estevez90
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Comment: C: Recommend Your Favorite Introductory "R In Bioinformatics" Books And Resources
... +1 for Adler's R in a Nutshell which I have found to be very helpful for getting to grips with data munging especially. ...
written 7.5 years ago by James Estevez90

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