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Posts by xpastor
... I'd just like to mention that after removing the supplemental reads in the bwa mem alignment (samtools view -bh -F 0x800) pindel seems to behave similar as to bwa aln alignments, at least computationally. I still need to confirm how about the final results. If this is true I guess my initial suspic ...
... I’m using pindel on a set of sample pairs aligned using bwa mem but it doesn’t make a good usage of the specified threads. In addition it seems to take too long to process a single chromosome. When I run pindel on the same samples but aligned using bwa aln the profile of multithreaded usage is comp ...
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