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Comment: Comment: Which hg38 file?
8 months ago by Dataman ▴ 380
0
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1
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4.1k
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Comment: Comment: Which hg38 file?
8 months ago by Dataman ▴ 380
1
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0
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10.0k
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Comment: Comment: all coding regions .bed file hg38 Whole Genome Sequencing
23 months ago by Dataman ▴ 380
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0
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3.3k
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Comment: Comment: Did anyone success in working with the broad ABSOLUTE?
23 months ago by Dataman ▴ 380
0
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0
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14k
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Comment: Comment: Anyone Has A Working Example On How To Run BROAD's ABSOLUTE On Exome Sequencing
23 months ago by Dataman ▴ 380
0
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1
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765
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Comment: Comment: What are accession numbers starting with PIR e.g. PIR60289?
2.3 years ago by Dataman ▴ 380
3
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3
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765
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What are accession numbers starting with PIR e.g. PIR60289?
accession_number
updated 2.3 years ago by 15k • written 2.3 years ago by ▴ 380
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3.5k
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Comment: Comment: GATK4 ASEReadCounter returns nothing
2.3 years ago by Dataman ▴ 380
0
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0
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10k
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Comment: Comment: Fisher'S Exact Test And Odds Ratio
2.3 years ago by Dataman ▴ 380
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0
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5.8k
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Comment: Comment: What is allele-specific binding, allele-specific expression, and allelic imbalan
2.4 years ago by Dataman ▴ 380
0
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1
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7.1k
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Comment: C: ChIP seq basic terminology: what is a ChIP-seq tag?
updated 3.8 years ago by 100k • written 3.8 years ago by ▴ 380
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0
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9.6k
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Comment: C: Convert Tab delimited file to VCF file
4.2 years ago by Dataman ▴ 380
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0
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25k
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Comment: Comment: SNP annotation tool
updated 2.2 years ago by 43k • written 4.2 years ago by ▴ 380
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0
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1.5k
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Comment: C: GATK HaplotypeCaller/GenotypeGVCFs assigning GQ 0 and GT ./. at well-covered, hi
4.3 years ago by Dataman ▴ 380
1
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0
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4.9k
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Comment: C: How to create B-allele frequency file for ADTEx?
updated 4.3 years ago by 43k • written 8.2 years ago by ▴ 380
0
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1
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12k
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Comment: C: DP in VCF files?
4.3 years ago by Dataman ▴ 380
0
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1
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12k
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Comment: C: DP in VCF files?
4.3 years ago by Dataman ▴ 380
0
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0
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7.3k
views
Comment: C: What is the best way to make a bam file smaller by removing unwanted information
updated 4.3 years ago by 43k • written 8.3 years ago by ▴ 380
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0
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7.3k
views
Comment: C: What is the best way to make a bam file smaller by removing unwanted information
updated 4.3 years ago by 43k • written 8.3 years ago by ▴ 380
0
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1
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5.0k
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Comment: C: Removing the OQ tag from a BAM file
updated 4.3 years ago by 43k • written 8.3 years ago by ▴ 380
0
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0
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7.3k
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Comment: C: What is the best way to make a bam file smaller by removing unwanted information
updated 4.3 years ago by 43k • written 8.2 years ago by ▴ 380
1
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0
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21k
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Answer: A: Recommendations For Python Vcf Parser/Writer?
4.4 years ago by Dataman ▴ 380
0
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1
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3.2k
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Answer: A: How to create a pooled normal exome sample?
updated 4.4 years ago by 43k • written 8.8 years ago by ▴ 380
0
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0
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28k
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Comment: C: What is the difference between narrow peak, Broad peak and a gapped peak of a c
4.5 years ago by Dataman ▴ 380
2
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0
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36k
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Comment: C: ATAC-seq peak calling with MACS
4.5 years ago by Dataman ▴ 380
0
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0
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15k
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Comment: C: How To Count The Reads Mapped To Exon And Exon-Exon Junctions?
4.6 years ago by Dataman ▴ 380
1
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1
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6.0k
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Comment: C: vcfanno quickly annotate a vcf with other VCFs, BEDs, BAMs
4.6 years ago by Dataman ▴ 380
0
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0
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3.4k
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Comment: C: Quality Control Software For Targeted Sequencing?
5.2 years ago by Dataman ▴ 380
0
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0
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3.4k
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Comment: C: Quality Control Software For Targeted Sequencing?
5.2 years ago by Dataman ▴ 380
3
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5
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2.2k
views
What kind of systematic bias of sequencing data the following normalization procedure address?
next-gen normalization bias
updated 5.6 years ago by 43k • written 8.2 years ago by ▴ 380
0
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1
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2.2k
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Comment: C: What kind of systematic bias of sequencing data the following normalization proc
updated 5.6 years ago by 43k • written 8.2 years ago by ▴ 380
0
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0
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2.2k
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Comment: C: What kind of systematic bias of sequencing data the following normalization proc
updated 5.6 years ago by 43k • written 8.2 years ago by ▴ 380
30
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9
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26k
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samtools bedcov vs. bedtools coverage
DNA-seq coverage
updated 5.6 years ago by 43k • written 7.9 years ago by ▴ 380
0
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0
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28k
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Comment: C: What Makes One Probability Distribution Better For Rna-Seq Than Another?
5.9 years ago by Dataman ▴ 380
0
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0
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4.8k
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Comment: C: Why Is Snp Data Generally Restricted?
6.3 years ago by Dataman ▴ 380
0
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1
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180k
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Comment: C: Forward And Reverse Strand Conventions
6.3 years ago by Dataman ▴ 380
0
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0
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4.7k
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Comment: C: demultiplexing Illumina output with fastq_multx
6.5 years ago by Dataman ▴ 380
0
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1
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4.7k
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Comment: C: demultiplexing Illumina output with fastq_multx
6.5 years ago by Dataman ▴ 380
20
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16
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5.7k
views
Breaking down the reference genome chromosome-wise
reference_genome fasta
updated 2.2 years ago by 43k • written 9.5 years ago by ▴ 380
0
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3
replies
3.2k
views
How to create a pooled normal exome sample?
copy-number-analysis exome next-gen-sequencing
updated 16 months ago by 43k • written 8.8 years ago by ▴ 380
0
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0
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12k
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Comment: C: Calculating GC content from BAM file by BED file
7.0 years ago by Dataman ▴ 380
0
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1
reply
23k
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Comment: C: Bioinformatics courses, workshops or training
7.0 years ago by Dataman ▴ 380
0
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2
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23k
views
Comment: C: Bioinformatics courses, workshops or training
7.0 years ago by Dataman ▴ 380
1
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0
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59k
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Comment: C: Subsampling Bam File With Samtools
7.2 years ago by Dataman ▴ 380
1
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0
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69k
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Comment: C: What is difference between soft-clipped and hard-clipped in SAM specification?
7.3 years ago by Dataman ▴ 380
0
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0
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61k
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Comment: C: How To Sort Bed Format File
7.6 years ago by Dataman ▴ 380
0
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1
reply
15k
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Comment: C: How To Compute Gene Enrichment P-Value? (Significantly More Than Expected)
7.7 years ago by Dataman ▴ 380
1
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0
replies
1.8k
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Answer: A: Is there mirwalk2.0 client-side or library?
7.7 years ago by Dataman ▴ 380
2
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1
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3.2k
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Answer: A: What training do you think a computer scientist should do to move into the bioin
7.7 years ago by Dataman ▴ 380
0
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0
replies
2.1k
views
Best way to normalize Human BodyMap 2.0 data
RNA-Seq normalization
updated 20 months ago by 43k • written 8.4 years ago by ▴ 380
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