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Comment: Comment: Which hg38 file?
6 weeks ago by Dataman ▴ 370
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1
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2.5k
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Comment: Comment: Which hg38 file?
6 weeks ago by Dataman ▴ 370
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0
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7.7k
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Comment: Comment: all coding regions .bed file hg38 Whole Genome Sequencing
16 months ago by Dataman ▴ 370
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0
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3.1k
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Comment: Comment: Did anyone success in working with the broad ABSOLUTE?
16 months ago by Dataman ▴ 370
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0
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14k
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Comment: Comment: Anyone Has A Working Example On How To Run BROAD's ABSOLUTE On Exome Sequencing
16 months ago by Dataman ▴ 370
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1
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598
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Comment: Comment: What are accession numbers starting with PIR e.g. PIR60289?
20 months ago by Dataman ▴ 370
3
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3
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598
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What are accession numbers starting with PIR e.g. PIR60289?
accession_number
updated 20 months ago by 14k • written 20 months ago by ▴ 370
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3.1k
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Comment: Comment: GATK4 ASEReadCounter returns nothing
21 months ago by Dataman ▴ 370
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0
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9.8k
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Comment: Comment: Fisher'S Exact Test And Odds Ratio
21 months ago by Dataman ▴ 370
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0
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5.5k
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Comment: Comment: What is allele-specific binding, allele-specific expression, and allelic imbalan
22 months ago by Dataman ▴ 370
0
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1
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6.7k
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Comment: C: ChIP seq basic terminology: what is a ChIP-seq tag?
updated 3.2 years ago by 98k • written 3.2 years ago by ▴ 370
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0
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9.1k
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Comment: C: Convert Tab delimited file to VCF file
3.7 years ago by Dataman ▴ 370
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0
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24k
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Comment: Comment: SNP annotation tool
updated 20 months ago by 40k • written 3.7 years ago by ▴ 370
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0
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1.4k
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Comment: C: GATK HaplotypeCaller/GenotypeGVCFs assigning GQ 0 and GT ./. at well-covered, hi
3.7 years ago by Dataman ▴ 370
1
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0
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4.7k
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Comment: C: How to create B-allele frequency file for ADTEx?
updated 3.7 years ago by 40k • written 7.6 years ago by ▴ 370
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1
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11k
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Comment: C: DP in VCF files?
3.7 years ago by Dataman ▴ 370
0
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1
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11k
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Comment: C: DP in VCF files?
3.7 years ago by Dataman ▴ 370
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0
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6.5k
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Comment: C: What is the best way to make a bam file smaller by removing unwanted information
updated 3.7 years ago by 40k • written 7.7 years ago by ▴ 370
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0
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6.5k
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Comment: C: What is the best way to make a bam file smaller by removing unwanted information
updated 3.7 years ago by 40k • written 7.7 years ago by ▴ 370
0
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1
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4.7k
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Comment: C: Removing the OQ tag from a BAM file
updated 3.7 years ago by 40k • written 7.7 years ago by ▴ 370
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0
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6.5k
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Comment: C: What is the best way to make a bam file smaller by removing unwanted information
updated 3.8 years ago by 40k • written 7.7 years ago by ▴ 370
1
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0
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20k
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Answer: A: Recommendations For Python Vcf Parser/Writer?
3.9 years ago by Dataman ▴ 370
0
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1
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3.0k
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Answer: A: How to create a pooled normal exome sample?
updated 3.9 years ago by 40k • written 8.2 years ago by ▴ 370
0
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0
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26k
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Comment: C: What is the difference between narrow peak, Broad peak and a gapped peak of a c
4.0 years ago by Dataman ▴ 370
2
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0
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34k
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Comment: C: ATAC-seq peak calling with MACS
4.0 years ago by Dataman ▴ 370
0
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0
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15k
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Comment: C: How To Count The Reads Mapped To Exon And Exon-Exon Junctions?
4.0 years ago by Dataman ▴ 370
1
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1
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5.7k
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Comment: C: vcfanno quickly annotate a vcf with other VCFs, BEDs, BAMs
4.0 years ago by Dataman ▴ 370
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0
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3.2k
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Comment: C: Quality Control Software For Targeted Sequencing?
4.6 years ago by Dataman ▴ 370
0
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0
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3.2k
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Comment: C: Quality Control Software For Targeted Sequencing?
4.6 years ago by Dataman ▴ 370
3
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5
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2.0k
views
What kind of systematic bias of sequencing data the following normalization procedure address?
next-gen normalization bias
updated 5.0 years ago by 40k • written 7.6 years ago by ▴ 370
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1
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2.0k
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Comment: C: What kind of systematic bias of sequencing data the following normalization proc
updated 5.0 years ago by 40k • written 7.6 years ago by ▴ 370
0
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0
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2.0k
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Comment: C: What kind of systematic bias of sequencing data the following normalization proc
updated 5.0 years ago by 40k • written 7.6 years ago by ▴ 370
30
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9
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25k
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samtools bedcov vs. bedtools coverage
DNA-seq coverage
updated 5.1 years ago by 40k • written 7.3 years ago by ▴ 370
0
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0
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27k
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Comment: C: What Makes One Probability Distribution Better For Rna-Seq Than Another?
5.3 years ago by Dataman ▴ 370
0
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0
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4.4k
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Comment: C: Why Is Snp Data Generally Restricted?
5.8 years ago by Dataman ▴ 370
0
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1
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171k
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Comment: C: Forward And Reverse Strand Conventions
5.8 years ago by Dataman ▴ 370
0
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0
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4.4k
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Comment: C: demultiplexing Illumina output with fastq_multx
5.9 years ago by Dataman ▴ 370
0
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1
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4.4k
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Comment: C: demultiplexing Illumina output with fastq_multx
6.0 years ago by Dataman ▴ 370
20
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16
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5.2k
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Breaking down the reference genome chromosome-wise
reference_genome fasta
updated 20 months ago by 40k • written 8.9 years ago by ▴ 370
0
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3
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3.0k
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How to create a pooled normal exome sample?
copy-number-analysis exome next-gen-sequencing
updated 9 months ago by 40k • written 8.2 years ago by ▴ 370
0
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0
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11k
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Comment: C: Calculating GC content from BAM file by BED file
6.4 years ago by Dataman ▴ 370
0
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1
reply
21k
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Comment: C: Bioinformatics courses, workshops or training
6.5 years ago by Dataman ▴ 370
0
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2
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21k
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Comment: C: Bioinformatics courses, workshops or training
6.5 years ago by Dataman ▴ 370
1
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0
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54k
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Comment: C: Subsampling Bam File With Samtools
6.6 years ago by Dataman ▴ 370
1
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0
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66k
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Comment: C: What is difference between soft-clipped and hard-clipped in SAM specification?
6.7 years ago by Dataman ▴ 370
0
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0
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57k
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Comment: C: How To Sort Bed Format File
7.0 years ago by Dataman ▴ 370
0
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1
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15k
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Comment: C: How To Compute Gene Enrichment P-Value? (Significantly More Than Expected)
7.1 years ago by Dataman ▴ 370
1
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0
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1.7k
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Answer: A: Is there mirwalk2.0 client-side or library?
7.1 years ago by Dataman ▴ 370
2
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1
reply
2.9k
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Answer: A: What training do you think a computer scientist should do to move into the bioin
7.1 years ago by Dataman ▴ 370
0
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0
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2.0k
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Best way to normalize Human BodyMap 2.0 data
RNA-Seq normalization
updated 13 months ago by 40k • written 7.9 years ago by ▴ 370
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