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3
votes
3
replies
656
views
What are accession numbers starting with PIR e.g. PIR60289?
accession_number
updated 23 months ago by 14k • written 23 months ago by ▴ 370
3
votes
5
replies
2.0k
views
What kind of systematic bias of sequencing data the following normalization procedure address?
next-gen normalization bias
updated 5.2 years ago by 41k • written 7.8 years ago by ▴ 370
30
votes
9
replies
26k
views
samtools bedcov vs. bedtools coverage
DNA-seq coverage
updated 5.3 years ago by 41k • written 7.5 years ago by ▴ 370
20
votes
16
replies
5.4k
views
Breaking down the reference genome chromosome-wise
reference_genome fasta
updated 22 months ago by 41k • written 9.1 years ago by ▴ 370
0
votes
3
replies
3.1k
views
How to create a pooled normal exome sample?
copy-number-analysis exome next-gen-sequencing
updated 11 months ago by 41k • written 8.4 years ago by ▴ 370
0
votes
0
replies
2.0k
views
Best way to normalize Human BodyMap 2.0 data
RNA-Seq normalization
updated 15 months ago by 41k • written 8.1 years ago by ▴ 370
5
votes
5
replies
3.8k
views
what does Num_Probes in a segmentation file refer to?
sequencing
updated 7.7 years ago by ★ 3.0k • written 7.7 years ago by ▴ 370
19
votes
15
replies
6.8k
views
6 follow
What is the best way to make a bam file smaller by removing unwanted information?
bam next-gen-sequencing
updated 16 months ago by 41k • written 7.9 years ago by ▴ 370
6
votes
5
replies
4.8k
views
How to create B-allele frequency file for ADTEx?
adtex next-gen-sequencing
updated 11 months ago by 41k • written 8.4 years ago by ▴ 370
11
votes
1
reply
4.7k
views
Does one need to sort and index after performing a rmdup in Samtools?
sequencing alignment samtools variant
updated 19 months ago by 41k • written 8.8 years ago by ▴ 370
2
votes
1
reply
2.9k
views
Estimating the expected number of reads that overlap a [heterozygous] snp in one window from the read depth, read length and resolution
statistics allele simualtion snp baf
updated 23 months ago by 41k • written 9.2 years ago by ▴ 370
6
votes
7
replies
2.6k
views
Why is the noise level higher in regions with amplification than regions with deletion in the genome?
snp dna-seq allele-fraction
updated 5 months ago by 41k • written 9.4 years ago by ▴ 370
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