User: ab

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ab0
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Posts by ab

<prev • 7 results • page 1 of 1 • next >
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Comment: C: DeSeq2 error correction and experiment design
... Actually I tried to used the airway package with my data and I think it was not the correct way. I am doing in htseq path. Yes, you are correct I should spend some time to understand the analysis. Thanks ATpoint. ...
written 5 weeks ago by ab0
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Comment: C: DeSeq2 error correction and experiment design
... Thanks genomax for the suggestion and I will follow it. ...
written 5 weeks ago by ab0
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Comment: A: DeSeq2 error correction and experiment design
... I have some doubt, as mentioned in the steps to use "airway" package in the steps for RangedSummarizedExperiment. When I am using that it is adding the example data from that package. And another doubt is as I have 2 samples and 3 replicates each (Treated - sample1, sample4, sample5, Untreated - s ...
written 5 weeks ago by ab0
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Comment: A: DeSeq2 error correction and experiment design
... Thank you ATpoint for quick reply... :) ...
written 5 weeks ago by ab0
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DeSeq2 error correction and experiment design
... Hi All, I am using DeSeq2 for differential expression analysis. I have treated (3 replicates) and untreated (3 replicates). I have used htseq-count for read count. For DEG I am following below link. But I am facing some error. Below is the error. df_count_matrix <- data.frame(file_name = dd) ...
R rna-seq written 5 weeks ago by ab0
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Comment: A: How to identify used and unused reads for an assembly performed with Abyss
... Thank you Prakki Rama ...
written 5.0 years ago by ab0
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How to identify used and unused reads for an assembly performed with Abyss
... Hi, All I am doing de novo assembly in ABySS and i got the result.  Now I want to know how many reads are assembled and how many are not? Can anyone help me to find out? Thanks in advance. ...
assembly tool abyss written 5.0 years ago by ab0

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Popular Question 5.0 years ago, created a question with more than 1,000 views. For How to identify used and unused reads for an assembly performed with Abyss

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