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13
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9
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5.7k
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should stop codon be counted as part of CDS
gtf cds stop codon
updated 3.0 years ago by ▴ 40 • written 7.7 years ago by ★ 1.1k
1
vote
1
reply
1.5k
views
How does deseq2 encode more than 2 levels
RNA-Seq DESeq2 differential expression
updated 5.1 years ago by 20 • written 6.8 years ago by ★ 1.1k
1
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0
replies
9.1k
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Answer: A: How to plot RNASeq data in PCA
5.1 years ago by -_- ★ 1.1k
0
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1
reply
3.7k
views
Comment: C: Where are mutation files (MAF) for TCGA normal samples on Firebrowse
5.4 years ago by -_- ★ 1.1k
0
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0
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3.7k
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Comment: C: Where are mutation files (MAF) for TCGA normal samples on Firebrowse
5.4 years ago by -_- ★ 1.1k
1
vote
8
replies
3.7k
views
Where are mutation files (MAF) for TCGA normal samples on Firebrowse
TCGA Normal mutation Firebrowse Firehose
updated 5.4 years ago by ▴ 100 • written 7.0 years ago by ★ 1.1k
0
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1
reply
5.6k
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Comment: C: Where to get somatic mutations from WGS data?!
5.5 years ago by -_- ★ 1.1k
0
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0
replies
3.7k
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Comment: C: Does exome capture kit in TCGA project include UTR region
5.5 years ago by -_- ★ 1.1k
0
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1
reply
2.2k
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Comment: C: Finding miRNA motifs from Exome sequencing
5.5 years ago by -_- ★ 1.1k
0
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1
reply
5.6k
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Comment: C: Where to get somatic mutations from WGS data?!
5.5 years ago by -_- ★ 1.1k
0
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0
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3.4k
views
Comment: C: Exome and UTRs
5.5 years ago by -_- ★ 1.1k
0
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1
reply
3.7k
views
Comment: C: Where are mutation files (MAF) for TCGA normal samples on Firebrowse
5.5 years ago by -_- ★ 1.1k
0
votes
1
reply
3.7k
views
Comment: C: Where are mutation files (MAF) for TCGA normal samples on Firebrowse
5.5 years ago by -_- ★ 1.1k
0
votes
0
replies
9.1k
views
Comment: C: Where to download latest TCGA MAF files?
5.5 years ago by -_- ★ 1.1k
1
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0
replies
9.7k
views
Answer: A: How to convert gff file to a csv file
5.5 years ago by -_- ★ 1.1k
4
votes
3
replies
2.0k
views
softclip vs mismatch at either end
SAM alignment
updated 5.6 years ago by 20 • written 7.7 years ago by ★ 1.1k
2
votes
1
reply
2.8k
views
Definition of transcript vs gene
transcript gene
5.9 years ago by -_- ★ 1.1k
2
votes
0
replies
7.0k
views
Comment: C: Subtyping on TCGA BRCA RNAseqV2 data with PAM50
6.2 years ago by -_- ★ 1.1k
0
votes
1
reply
5.4k
views
Comment: C: Is it appropriate to assume genes of similar expression level also have similar
6.2 years ago by -_- ★ 1.1k
1
vote
1
reply
5.4k
views
Comment: C: Is it appropriate to assume genes of similar expression level also have similar
6.2 years ago by -_- ★ 1.1k
13
votes
30
replies
5.4k
views
Is it appropriate to assume genes of similar expression level also have similar variance?
deseq differential-expression
updated 6.2 years ago by 5.7k • written 6.3 years ago by ★ 1.1k
0
votes
0
replies
5.4k
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Comment: C: Is it appropriate to assume genes of similar expression level also have similar
6.2 years ago by -_- ★ 1.1k
0
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1
reply
5.4k
views
Comment: C: Is it appropriate to assume genes of similar expression level also have similar
6.2 years ago by -_- ★ 1.1k
0
votes
0
replies
5.4k
views
Comment: C: Is it appropriate to assume genes of similar expression level also have similar
6.2 years ago by -_- ★ 1.1k
0
votes
1
reply
5.4k
views
Comment: C: Is it appropriate to assume genes of similar expression level also have similar
6.2 years ago by -_- ★ 1.1k
0
votes
1
reply
5.4k
views
Comment: C: Is it appropriate to assume genes of similar expression level also have similar
6.2 years ago by -_- ★ 1.1k
1
vote
1
reply
5.4k
views
Comment: C: Is it appropriate to assume genes of similar expression level also have similar
6.3 years ago by -_- ★ 1.1k
0
votes
0
replies
5.4k
views
Comment: C: Is it appropriate to assume genes of similar expression level also have similar
6.3 years ago by -_- ★ 1.1k
1
vote
2
replies
5.4k
views
Comment: C: Is it appropriate to assume genes of similar expression level also have similar
6.3 years ago by -_- ★ 1.1k
0
votes
0
replies
5.4k
views
Comment: C: Is it appropriate to assume genes of similar expression level also have similar
6.3 years ago by -_- ★ 1.1k
0
votes
0
replies
5.4k
views
Comment: C: Is it appropriate to assume genes of similar expression level also have similar
6.3 years ago by -_- ★ 1.1k
0
votes
1
reply
5.4k
views
Comment: C: Is it appropriate to assume genes of similar expression level also have similar
6.3 years ago by -_- ★ 1.1k
0
votes
1
reply
5.4k
views
Comment: C: Is it appropriate to assume genes of similar expression level also have similar
6.3 years ago by -_- ★ 1.1k
0
votes
1
reply
5.4k
views
Comment: C: Is it appropriate to assume genes of similar expression level also have similar
6.3 years ago by -_- ★ 1.1k
0
votes
0
replies
38k
views
Comment: C: Interpreting TCGA .rsem.genes.results and .rsem.genes.normalized_results files.
6.3 years ago by -_- ★ 1.1k
1
vote
0
replies
3.0k
views
Comment: C: How to reproduce TCGA rsem values from firebrowse
6.5 years ago by -_- ★ 1.1k
0
votes
0
replies
8.7k
views
Comment: C: CCLE RNA-seq library protocol
6.5 years ago by -_- ★ 1.1k
0
votes
0
replies
3.0k
views
Comment: C: How to reproduce TCGA rsem values from firebrowse
6.5 years ago by -_- ★ 1.1k
3
votes
3
replies
3.0k
views
How to reproduce TCGA rsem values from firebrowse
TCGA expression rsem
updated 6.5 years ago by 141k • written 6.5 years ago by ★ 1.1k
0
votes
1
reply
8.5k
views
Answer: C: Which version of UCSC annotation are used in TCGA RNASeqV2 isoforms expression d
6.6 years ago by -_- ★ 1.1k
0
votes
1
reply
38k
views
Comment: C: Interpreting TCGA .rsem.genes.results and .rsem.genes.normalized_results files.
6.8 years ago by -_- ★ 1.1k
0
votes
1
reply
38k
views
Comment: C: Interpreting TCGA .rsem.genes.results and .rsem.genes.normalized_results files.
6.8 years ago by -_- ★ 1.1k
1
vote
0
replies
1.5k
views
Answer: A: How does deseq2 encode more than 2 levels
6.8 years ago by -_- ★ 1.1k
0
votes
0
replies
2.1k
views
Comment: C: Normal blood RNA-Seq data from cancer (any cancer) patients
7.0 years ago by -_- ★ 1.1k
0
votes
2
replies
2.1k
views
Normal blood RNA-Seq data from cancer (any cancer) patients
cancer blood RNA-Seq normal
7.0 years ago by -_- ★ 1.1k
1
vote
0
replies
108k
views
Comment: C: Cheat Sheet For One-Based Vs Zero-Based Coordinate Systems
7.0 years ago by -_- ★ 1.1k
1
vote
1
reply
108k
views
Comment: C: Cheat Sheet For One-Based Vs Zero-Based Coordinate Systems
7.1 years ago by -_- ★ 1.1k
0
votes
0
replies
8.0k
views
Answer: A: Retrieve species name using taxaIDs of NCBI
7.1 years ago by -_- ★ 1.1k
0
votes
0
replies
2.5k
views
Comment: C: Where can I find the analysis ID to Firehose TCGA RNA-Seq samples
7.1 years ago by -_- ★ 1.1k
0
votes
4
replies
2.5k
views
Where can I find the analysis ID to Firehose TCGA RNA-Seq samples
RNA-Seq TCGA Firehose Firebrowse
7.1 years ago by -_- ★ 1.1k
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