User: rse

gravatar for rse
rse50
Reputation:
50
Status:
New User
Location:
Singapore
Last seen:
2 months, 3 weeks ago
Joined:
3 years, 12 months ago
Email:
r***********@gmail.com

Posts by rse

<prev • 64 results • page 1 of 7 • next >
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Answer: A: What to do to identify rare variatns from vcf files resulted from UnifiedGenotyp
... Hi, you can annotate against population db's and then filter ...
written 3 months ago by rse50
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Replace read group
... Hi, I have multiple read groups in my bam file. I want to replace one read group and not the other. How should i proceed? Picard tools would replace all ? Will linux commands work? ...
genome sequencing written 3 months ago by rse50
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Comment: C: What is Read Group platform??
... Ok sure. Thanks a lot. ...
written 3 months ago by rse50
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Comment: A: What is Read Group platform??
... Hi, I have multiple read groups in my bam file. I want to replace one read group and not the other. How should i proceed? Picard tools would replace all ? Will linux commands work? ...
written 3 months ago by rse50
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Comment: C: Does vcf-consensus support indels?
... It supports only SNVs and deletions. Not insertions ...
written 3 months ago by rse50
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Comment: C: GT and GL fields in VCF file
... Hi, sometimes i see 1/. or ./1 or 0/. or ./0 What does it mean? ...
written 3 months ago by rse50
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Upload data files on web server
... Hi all, I wanted to ask if it is safe to upload data on the public web servers for analysis? Regards ...
snp written 3 months ago by rse50 • updated 8 weeks ago by Biostar ♦♦ 20
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Comment: C: What web services can annotate a VCF coming from Streptococcus or Meningococcus
... Annovar, Gemini, VEP, snpEff ...
written 4 months ago by rse50
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Comment: C: Fasta sequence from Bam file
... I am working on resolving insertions/ duplications/ translocations. I need to confirm the breakpoints by doing PCR and hence need the raw sequence to design the same. Is there a way that we can get the raw consensus FASTA that will act as a template for my PCR primer designing? ...
written 4 months ago by rse50
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Comment: C: Fasta sequence from Bam file
... Yes, i agree. Should have specified. However, the generation of the consensus sequence works for SNVs and Deletions only. It fails for Insertions and Duplications. Moreover, the consensus sequence is highly dependent on the variant caller used. ...
written 4 months ago by rse50

Latest awards to rse

Scholar 3 months ago, created an answer that has been accepted. For A: What is Read Group platform??

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