User: rse

gravatar for rse
rse40
Reputation:
40
Status:
New User
Location:
Singapore
Last seen:
22 hours ago
Joined:
3 years, 9 months ago
Email:
r***********@gmail.com

Posts by rse

<prev • 64 results • page 1 of 7 • next >
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Answer: A: What to do to identify rare variatns from vcf files resulted from UnifiedGenotyp
... Hi, you can annotate against population db's and then filter ...
written 12 days ago by rse40
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Replace read group
... Hi, I have multiple read groups in my bam file. I want to replace one read group and not the other. How should i proceed? Picard tools would replace all ? Will linux commands work? ...
genome sequencing written 12 days ago by rse40
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Comment: C: What is Read Group platform??
... Ok sure. Thanks a lot. ...
written 12 days ago by rse40
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Comment: A: What is Read Group platform??
... Hi, I have multiple read groups in my bam file. I want to replace one read group and not the other. How should i proceed? Picard tools would replace all ? Will linux commands work? ...
written 13 days ago by rse40
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Comment: C: Does vcf-consensus support indels?
... It supports only SNVs and deletions. Not insertions ...
written 20 days ago by rse40
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Comment: C: GT and GL fields in VCF file
... Hi, sometimes i see 1/. or ./1 or 0/. or ./0 What does it mean? ...
written 29 days ago by rse40
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Upload data files on web server
... Hi all, I wanted to ask if it is safe to upload data on the public web servers for analysis? Regards ...
snp written 29 days ago by rse40
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Comment: C: What web services can annotate a VCF coming from Streptococcus or Meningococcus
... Annovar, Gemini, VEP, snpEff ...
written 5 weeks ago by rse40
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Comment: C: Fasta sequence from Bam file
... I am working on resolving insertions/ duplications/ translocations. I need to confirm the breakpoints by doing PCR and hence need the raw sequence to design the same. Is there a way that we can get the raw consensus FASTA that will act as a template for my PCR primer designing? ...
written 6 weeks ago by rse40
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Comment: C: Fasta sequence from Bam file
... Yes, i agree. Should have specified. However, the generation of the consensus sequence works for SNVs and Deletions only. It fails for Insertions and Duplications. Moreover, the consensus sequence is highly dependent on the variant caller used. ...
written 6 weeks ago by rse40

Latest awards to rse

Scholar 13 days ago, created an answer that has been accepted. For A: What is Read Group platform??

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