User: rse

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rse70
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4 weeks ago
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Posts by rse

<prev • 83 results • page 1 of 9 • next >
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Comment: C: samtools sort failed to merge tmp .bam file
... Hi, i am also having the same issue. THe output of ulimit -n is 1024 Thanks ...
written 28 days ago by rse70
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Comment: C: Retrieve previous R package
... Thank you for the help. I think i will be able to find the data in backup. Cheers. ...
written 7 weeks ago by rse70
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Comment: C: Retrieve previous R package
... Ok...Thank you for the help. ...
written 7 weeks ago by rse70
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Comment: C: Retrieve previous R package
... Thanks for your response. I have put some data myself on extdata folder which had example files to run. I installed again using biocLite as a package was missing. But i cannot find my data now. ...
written 7 weeks ago by rse70
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Retrieve previous R package
... Hi, I installed an R package which was already installed and it overwrote my previous R package (that had data in it). How should i retrieve my previous R package? Thanks ...
R bioconductor written 7 weeks ago by rse70 • updated 4 days ago by h.mon22k
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Comment: C: Are there any tools for comparing structural variants between different callers?
... I tried using survivor tool, but i am not able to compare the SV calls. ...
written 9 weeks ago by rse70
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(Closed) RAM requirements for IGV and FastQC
... Hello, Does anyone know the minimum RAM requirements for running IGV and FastQC? Thank you Regards ...
sequencing written 11 weeks ago by rse70
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Comment: C: Structural Variations in IGV and SV Callers
... Thanks for the reply. Maybe the third snapshot can be a false positive. Are the first 2 screenshots hinting towards deletion? I would presume a dip in coverage or no coverage in a region to be called a deletion. I read IGV manual, but it doesn't tell about structural variation so well. Can you tell ...
written 12 weeks ago by rse70
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Comment: C: Structural Variations in IGV and SV Callers
... Thanks for your reply. The SV Calls and the snapshot is attached. Thanks SV Calls: 1 5175945 MantaDEL:378:1:2:0:0:0 A . . END=81713905;SVTYPE=DEL;SVLEN=-76537960;IMPRECISE;CIPOS=-195,196;CIEND=-340,341;UPSTREAM_PAIR_COUNT=5;DOWNSTREAM_PAIR_COUNT=6;PAIR_COUNT=5 1 725923 MantaDEL:11:21 ...
written 3 months ago by rse70 • updated 3 months ago by ATpoint12k
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Structural Variations in IGV and SV Callers
... Hello, I performed SV Calling using 3 SV Callers and all of the SV Callers showed a deletion at a particular genomic location. But i when i view the same genomic location in IGV, i see that all the whole region is well covered and there is no decline in the coverage from the neighbouring locations ( ...
sequencing written 3 months ago by rse70

Latest awards to rse

Popular Question 4 months ago, created a question with more than 1,000 views. For Learn to develop bioinformatics tools
Popular Question 8 months ago, created a question with more than 1,000 views. For Learn to develop bioinformatics tools
Popular Question 8 months ago, created a question with more than 1,000 views. For Retrieving gene names from list of mRNA accession IDs
Scholar 9 months ago, created an answer that has been accepted. For A: What is Read Group platform??

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