User: mew225

gravatar for mew225
mew22510
Reputation:
10
Status:
New User
Location:
United States
Last seen:
3 years, 7 months ago
Joined:
4 years, 11 months ago
Email:
m*****@gmail.com

Posts by mew225

<prev • 7 results • page 1 of 1 • next >
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Interpretation of InDels obtained from the Freebayes variant caller on Mitochondrial DNA
... Hello, I am calling variants on mitochondrial genomes using freebayes.  I am using the following command:  freebayes -f $REF -p 1 -F 0.6 $BAM | $VCFFILTER -f "QUAL > 20" > $F_6_OUT I have been playing with the -F thresholds to see which give me the best information.  I have found something ...
indel mtdna freebayes variant calling written 4.7 years ago by mew22510
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Comment: C: Comparison between .bam files
... Thanks.   ...
written 5.0 years ago by mew22510
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Comment: C: Comparison between .bam files
... The first.  I have to see what reads are in one and not in the other. ...
written 5.0 years ago by mew22510
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Comment: C: Comparison between .bam files
... I mean complement as in the set operator.  I need to see what is in one file that is not in the other. ...
written 5.0 years ago by mew22510
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Comparison between .bam files
... Hi, I need to do a complement between two bam files.  I have tried to use the diff function in bamUtils to find the differences between the two, but when I'm trying to use samtools to run further analyses it is telling me that I have a truncated file.  I haven't been able to find out if bamUtils is ...
ngs samtools written 5.0 years ago by mew22510 • updated 5.0 years ago by Pierre Lindenbaum121k
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Answer: A: Heteroplasmy detection program
... No I haven't. I'll give it a shot. Thanks!   ...
written 5.0 years ago by mew22510
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Heteroplasmy detection program
... Hi, I'm looking for software that detects heteroplasmic variants in mtDNA and have not had much luck.  Is there a program works well for calling these variants? Thanks! ...
mtdna written 5.0 years ago by mew22510 • updated 2.9 years ago by haansi50

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