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questions
0
votes
4
replies
789
views
How to globally specify that shell sessions for all tasks must source (e.g.) $HOME/.profile ?
cromwell
terra
wdl
docker
updated 7 months ago by
Patrick Magee
• 0 • written 7 months ago by
kynnjo
▴ 70
5
votes
9
replies
1.6k
views
Is there a way to merge VCF indices?
vcf
updated 7 months ago by
Ram
43k • written 20 months ago by
kynnjo
▴ 70
4
votes
3
replies
827
views
How to implement this two-stage one-to-many workflow using WDL?
wdl
updated 12 months ago by
Ruben
• 0 • written 12 months ago by
kynnjo
▴ 70
3
votes
4
replies
1.2k
views
What is the general structure of a WDL that implements "embarrassing parallelization"?
wdl
cromwell
updated 12 months ago by
Matthias Zepper
4.5k • written 13 months ago by
kynnjo
▴ 70
2
votes
2
replies
580
views
How to generate "dummy"/"fake" VCFs for testing software?
vcf
updated 13 months ago by
Pierre Lindenbaum
160k • written 13 months ago by
kynnjo
▴ 70
9
votes
13
replies
2.3k
views
How to merge 20K single-sample VCFs *without* using plink or plink2?
genotyping
vcf
updated 21 months ago by
chrchang523
10k • written 21 months ago by
kynnjo
▴ 70
1
vote
1
reply
444
views
How to drop specific sites from VCFs?
vcf
updated 22 months ago by
GenoMax
140k • written 22 months ago by
kynnjo
▴ 70
0
votes
3
replies
781
views
How to preserve alleles across plink operations?
vcf
plink
updated 23 months ago by
chrchang523
10k • written 23 months ago by
kynnjo
▴ 70
0
votes
0
replies
680
views
On the conventions for annotating the position of insertion and deletion variants
genotyping
indels
genomics
genome
variant
3.7 years ago by
kynnjo
▴ 70
3
votes
1
reply
690
views
How to extract ~2M short sequences based on coordinates from a 3G fasta file?
genome
assembly
sequence
3.7 years ago by
kynnjo
▴ 70
5
votes
3
replies
1.5k
views
How to use plink to consolidate multiple single-sample vcf files?
genotyping
vcf
plink
SNP
4.0 years ago by
kynnjo
▴ 70
1
vote
1
reply
1.2k
views
How does plink compute n_geno ("number of potentially valid call(s)")?
genotyping
plink
updated 4.7 years ago by
chrchang523
10k • written 4.7 years ago by
kynnjo
▴ 70
2
votes
1
reply
1.2k
views
Unix command-line alternatives to GenomeStudio's clustering?
genotyping
clustering
5.2 years ago by
kynnjo
▴ 70
6
votes
2
replies
1.2k
views
On conventions for human chromosome numbering in file names (1 vs 01, etc.)
genomics
updated 10 months ago by
Ram
43k • written 5.3 years ago by
kynnjo
▴ 70
2
votes
2
replies
1.3k
views
Where does Illumina make MEGA_Consortium_v2_15070954_A2.csv available?
illumina
genotyping
5.4 years ago by
kynnjo
▴ 70
1
vote
1
reply
1.2k
views
How to make small subset of large genotyping dataset with plink?
SNP
snp
updated 5.4 years ago by
Inquisitive8995
▴ 270 • written 5.4 years ago by
kynnjo
▴ 70
0
votes
1
reply
1.2k
views
What's the difference between the /rest/variant and /rest/variant/variant requests to the Exac API?
exac
api
snp
variant
updated 5.6 years ago by
finswimmer
16k • written 5.6 years ago by
kynnjo
▴ 70
4
votes
4
replies
2.1k
views
How to get minor allele frequencies from Exac?
exac
variants
allele
maf
api
updated 5.6 years ago by
finswimmer
16k • written 5.6 years ago by
kynnjo
▴ 70
6
votes
4
replies
3.9k
views
How to get 1000 Genomes data in bulk?
next-gen
1000-genomes
databases
api
updated 5.6 years ago by
Kevin Blighe
87k • written 5.6 years ago by
kynnjo
▴ 70
1
vote
1
reply
1.2k
views
Can FACSDiva be used without its GUI?
flow_cytometry
7.9 years ago by
kynnjo
▴ 70
3
votes
3
replies
2.5k
views
Looking for documentation on the semantics of kgXref.geneSymbol column in UCSC's hg19
genome
updated 20 months ago by
Ram
43k • written 8.4 years ago by
kynnjo
▴ 70
4
votes
4
replies
2.7k
views
Accessing UCSC mysql DB: ERROR 1045 (28000): Access denied for user 'genome'
genome
updated 19 months ago by
Ram
43k • written 8.4 years ago by
kynnjo
▴ 70
5
votes
3
replies
3.3k
views
Looking for clean list of gene names for UCSC's HG19
gene
genome
updated 19 months ago by
Ram
43k • written 8.4 years ago by
kynnjo
▴ 70
6
votes
2
replies
12k
views
R package for GSEA
R
updated 19 months ago by
Ram
43k • written 8.4 years ago by
kynnjo
▴ 70
24 results • Page
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