User: steven_friedenberg

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10
Status:
New User
Location:
United States
Last seen:
2 years, 11 months ago
Joined:
3 years, 3 months ago
Email:
s*****************@ncsu.edu

Posts by steven_friedenberg

<prev • 4 results • page 1 of 1 • next >
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Comment: C: What Are The 'Copy Number Detection' Tools Out There For Exome Capture Ngs Data.
... I've had great luck with CN.mops and it's relatively easy to use, even for an R newbie. Also Günter (the software's author) is very helpful and responsive! ...
written 3.0 years ago by steven_friedenberg10
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Comment: C: Problem for pindel2vcf to create VCF file from pindel created _D files
... Hi there, I am having a similar problem with pindel2vcf. Here is my command: /path/to/pindel2vcf -p /path/to/pindel_chrXsubset_D -r /path/to/canFam3.fa -R canFam31 -d 20141204 -v /path/to/pindel_chrXsubset_D.vcf -G And the output I'm getting is: terminate called after throwing an instance of 'std ...
written 3.0 years ago by steven_friedenberg10
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insertion in pindel _D file?
... Hi there, I'm a relative newbie to Pindel, and I have some questions about the output. I'm looking at my results, specifically the file with the _D extension. At some point in the file, it looks like the variants transition from deletions to insertions, ie there are gaps in the reads from my sample ...
pindel written 3.0 years ago by steven_friedenberg10 • updated 2.8 years ago by mohesan10
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Comment: C: Running Sift And Polyphen In Mouse And Other Species
... Hi Emily, I had a follow-up question for you about running SIFT in the dog. I see here that it should be possible, and I see that SIFT is available on Ensembl's web page for the dog. I'm running VEP locally on our cluster as recommended, but when I add the --sift flag to my command prompt, I get an ...
written 3.3 years ago by steven_friedenberg10

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