User: nayshool

gravatar for nayshool
nayshool20
Reputation:
20
Status:
New User
Location:
Israel
Last seen:
1 year, 11 months ago
Joined:
4 years, 9 months ago
Email:
n*******@gmail.com

Posts by nayshool

<prev • 10 results • page 1 of 1 • next >
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Comment: C: Tool for BAM coverage without the soft clipping base
... I don't want to count the soft clipping reads. Are those software will not count them? ...
written 24 months ago by nayshool20
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Tool for BAM coverage without the soft clipping base
... Hi everyone, I am looking for a software/script which calculate the mean coverage of an area without the soft clipping bases. It's exclude the soft/hard clipping bases and leave only the true annotated bases in the calculation. thank you ...
softclipping bam coverage written 24 months ago by nayshool20 • updated 24 months ago by Pierre Lindenbaum120k
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Copy Number Variation Tools
... Hi, We are searching for the best tool for detection of Copy Number Variants and/or Structural Variants from exome seq. We would like to incorporate that tool into out current pipeline. Which are the best tools for exome seq available as for today? thank you Omri ...
copy number variants cnv ngs alignment written 2.2 years ago by nayshool20 • updated 2.2 years ago by Titus850
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Comment: A: INDEL detection tool recommendation
... thanks everyone for your answers! ...
written 2.5 years ago by nayshool20
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INDEL detection tool recommendation
... Hi guys, I am looking for a tool to detect indels which range from couple of tens to couple of hundreds bases. What is the best tool for that mission? thank you Omri BTW, what is the diffrence between CNV to an INDELs? ...
indel cnv written 2.5 years ago by nayshool20
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Trios from 1kG
... Hi everyone, I am looking for control trio of DNA next generation sequances. I have tried to download the trio from 1000 genomes project (phase 1 and 3) but it seems that most of the children sequances are missing. Is it possible to get those sequances? or those samples were never sequanced anywhy ...
trio next-gen sequencing written 3.1 years ago by nayshool20
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NGS Pathway analysis for Trio
... Hi everyone!   I am looking for a tool for pathway analysis of next generation sequencing data of a trio (the child is sick with some neurological disease). Does anyone have recommended tool or tools for such a task?   Thank you   Omri ...
next-gen tool snp written 3.4 years ago by nayshool20 • updated 3.4 years ago by RamRS21k
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Comment: A: Looking for Jewish Exoms
... thank you all ffor your kind help! ...
written 3.8 years ago by nayshool20
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Looking for Jewish Exoms
... We are studying neurodegenerative disease using next generation sequencing on Jewish population. I am looking for control group contain exomes of healthy Jewish samples (especially from Ashkenazi or North Africa origin). Does anyone knows about such database which available to download? I looked a ...
exome jewish database written 3.9 years ago by nayshool20
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Problem with alignment
... Hello everyone! We have received from BGI china a few samples we sent for exome sequence + Basic analysis. We got the fastQ files and BAM files. I have made my own BAM files using BWA and Picard tools using the following commends: BWA: bwa mem human_g1k_v37.fasta file1.fq.gz file2.fq.gz file3.fq.g ...
next-gen alignment written 4.8 years ago by nayshool20 • updated 4.5 years ago by naruto1nrt20

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