Moderator: EagleEye

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EagleEye6.8k
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https://decodebiology....
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gridhrahakshi
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Investigating field of biology by applying logics of computer science, statistics and mathematics.

Posts by EagleEye

<prev • 964 results • page 2 of 97 • next >
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Answer: A: List of TCGA genes differentially expressed in normal versus tumor
... https://www.biostars.org/p/200971/#200972 http://ncg.kcl.ac.uk ...
written 4 weeks ago by EagleEye6.8k
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Comment: C: GO enrichment: enriched term was not assigned to all genes in functional annotat
... Here is how you can use your custom annotation file with GeneSCF v1.0, https://www.biostars.org/p/150137/#150175 ...
written 3 months ago by EagleEye6.8k
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Comment: C: GO enrichment: enriched term was not assigned to all genes in functional annotat
... If you have doubts, I would recommend using additional tools to verify the results. Have a look at this tool, https://www.biostars.org/p/108669/ ...
written 3 months ago by EagleEye6.8k
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Answer: A: for go enrichment analysis which tool do you recommend?
... https://www.biostars.org/p/108669/ ...
written 5 months ago by EagleEye6.8k
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Answer: A: Is it possible to use DAVID enrichment with single ranked list of genes?
... Try GeneSCF, https://www.biostars.org/p/108669/ ...
written 8 months ago by EagleEye6.8k
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Comment: C: Access to Enrichr
... Try it with a private or incognito browser window. ...
written 8 months ago by EagleEye6.8k
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Comment: C: Access to Enrichr
... Follow this link, https://amp.pharm.mssm.edu/Enrichr ...
written 8 months ago by EagleEye6.8k
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Answer: A: How to do a GO enrichment analysis for large amount of data using R
... You can do any number of list parallel using [GeneSCF][1]. This tool is specifically designed to handle larger datasets in one go. You can specify the directory where the list of genes are stored (list of text files) and specify the output directory, GeneSCF takes care of the rest. Your output will ...
written 8 months ago by EagleEye6.8k
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Comment: C: For multiple testing correction in GO analysis, is it ok to remove GO terms with
... Hi amandastahlke, I have used the p-value cutoff. Just to make it more stringent, I have added one more layer of the cutoff. No rule was applied. ...
written 10 months ago by EagleEye6.8k
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Answer: A: Whats best practice for Gene set enrichment analysis?
... Have a look at this simple tool which works with most updated database, https://www.biostars.org/p/108669/ ...
written 12 months ago by EagleEye6.8k

Latest awards to EagleEye

Commentator 20 days ago, created a comment with at least 3 up-votes. For C: Survey: What colour theme do you use in your terminal?
Teacher 21 days ago, created an answer with at least 3 up-votes. For A: How to check the type of identifier from ensembl?
Scholar 21 days ago, created an answer that has been accepted. For A: How to interpret the result of GO analysis using Ontologizer ?
Good Answer 3 months ago, created an answer that was upvoted at least 5 times. For A: Clinical Survival data of TCGA
Good Answer 5 months ago, created an answer that was upvoted at least 5 times. For A: Clinical Survival data of TCGA
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: How to check the type of identifier from ensembl?
Scholar 15 months ago, created an answer that has been accepted. For A: How to interpret the result of GO analysis using Ontologizer ?
Good Answer 16 months ago, created an answer that was upvoted at least 5 times. For A: Something better than GSEA?
Teacher 18 months ago, created an answer with at least 3 up-votes. For A: How to check the type of identifier from ensembl?
Appreciated 21 months ago, created a post with more than 5 votes. For A: How to check the type of identifier from ensembl?
Scholar 21 months ago, created an answer that has been accepted. For A: How to interpret the result of GO analysis using Ontologizer ?
Good Answer 21 months ago, created an answer that was upvoted at least 5 times. For A: Something better than GSEA?
Teacher 22 months ago, created an answer with at least 3 up-votes. For A: How to check the type of identifier from ensembl?
Scholar 22 months ago, created an answer that has been accepted. For A: How to interpret the result of GO analysis using Ontologizer ?
Commentator 22 months ago, created a comment with at least 3 up-votes. For C: Survey: What colour theme do you use in your terminal?
Teacher 23 months ago, created an answer with at least 3 up-votes. For A: How to check the type of identifier from ensembl?
Good Answer 2.1 years ago, created an answer that was upvoted at least 5 times. For A: Something better than GSEA?
Commentator 2.3 years ago, created a comment with at least 3 up-votes. For C: Survey: What colour theme do you use in your terminal?
Appreciated 2.3 years ago, created a post with more than 5 votes. For A: How to check the type of identifier from ensembl?

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