User: EagleEye

gravatar for EagleEye
EagleEye5.5k
Reputation:
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Sweden
Website:
https://www.researchga...
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gridhrahakshi
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Joined:
3 years, 11 months ago
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Investigating field of biology by applying logics of computer science, statistics and mathematics.

Posts by EagleEye

<prev • 855 results • page 2 of 86 • next >
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Answer: A: visualization of chromatin interaction networks
... - [Circos][1] is best to visualize chromosome and its interaction (Intra- and Inter-chromosomal). - If you are talking about HiC data try this, [HiCplotter][2] [1]: http://circos.ca [2]: https://github.com/kcakdemir/HiCPlotter ...
written 14 days ago by EagleEye5.5k
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Answer: A: How to make a clear box plot or whatever beautiful
... Try boxplot(log2(Ratio), notch=TRUE, col="gold") If in case you have zeros in your data, boxplot(log2(Ratio+1), notch=TRUE, col="gold") If you think showing outliers are not important, boxplot(log2(Ratio), outline=F, notch=TRUE, col="gold") Or boxplot(log2(Ratio+1), outline ...
written 15 days ago by EagleEye5.5k
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Comment: C: STAR alignment error- Segmentation fault (core dumped)
... Thanks a lot for all your suggestions. Reserving 19 cores instead of 15 cores solved the issue. ...
written 16 days ago by EagleEye5.5k
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Comment: C: STAR alignment error- Segmentation fault (core dumped)
... All log files looks fine till 'started sorting BAM' (final step) and after that I just get this single error message 'Segmentation fault'. ...
written 16 days ago by EagleEye5.5k
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Comment: C: STAR alignment error- Segmentation fault (core dumped)
... Yes I am using a cluster with workload manager. The cluster I am using has 20 cores per NODE with 128 GB RAM. I can demand max memory from the cores I request, for up-to 19 cores per NODE. An equal share of RAM for each core would mean that each core gets at most 6 GB of RAM. ...
written 16 days ago by EagleEye5.5k
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Comment: C: STAR alignment error- Segmentation fault (core dumped)
... Done. ...
written 16 days ago by EagleEye5.5k
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STAR alignment error- Segmentation fault (core dumped)
... Hello all, I am using STAR aligner to align my fastq files ranging from 2.5 to 13 GB (aligning for Human genome). STAR successfully completed the jobs for 2.5 to 3.5 GB files but it is giving error as 'Segmentation fault (core dumped)' for files with size 13 GB. I tried the following solutions, * ...
software error alignment star rna-seq written 16 days ago by EagleEye5.5k
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Answer: A: Metabolic Pathways From KEGG.
... With **GeneSCF** you can try to download one strain at a time using '**prepare_database**' module (with database parameter -db=KEGG). Its output contain pathways --> genes relationship. [Example][1] [1]: https://www.biostars.org/p/197414/#197416 ...
written 23 days ago by EagleEye5.5k
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Comment: C: awk specific line from another file
... Oops sorry it works fine. I did a stupid mistake. ...
written 26 days ago by EagleEye5.5k
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Comment: C: awk specific line from another file
... Yes but with my example above it did not work. I did not have 12 in my 'f1.txt'. ...
written 26 days ago by EagleEye5.5k

Latest awards to EagleEye

Teacher 5 days ago, created an answer with at least 3 up-votes. For A: How to check the type of identifier from ensembl?
Scholar 15 days ago, created an answer that has been accepted. For A: How to interpret the result of GO analysis using Ontologizer ?
Teacher 15 days ago, created an answer with at least 3 up-votes. For A: How to check the type of identifier from ensembl?
Scholar 18 days ago, created an answer that has been accepted. For A: How to interpret the result of GO analysis using Ontologizer ?
Teacher 18 days ago, created an answer with at least 3 up-votes. For A: How to check the type of identifier from ensembl?
Appreciated 19 days ago, created a post with more than 5 votes. For A: How to check the type of identifier from ensembl?
Appreciated 19 days ago, created a post with more than 5 votes. For A: How to check the type of identifier from ensembl?
Teacher 20 days ago, created an answer with at least 3 up-votes. For A: How to check the type of identifier from ensembl?
Scholar 20 days ago, created an answer that has been accepted. For A: How to interpret the result of GO analysis using Ontologizer ?
Teacher 4 weeks ago, created an answer with at least 3 up-votes. For A: How to check the type of identifier from ensembl?
Appreciated 5 weeks ago, created a post with more than 5 votes. For A: How to check the type of identifier from ensembl?
Commentator 5 weeks ago, created a comment with at least 3 up-votes. For C: Survey: What colour theme do you use in your terminal?
Scholar 5 weeks ago, created an answer that has been accepted. For A: How to interpret the result of GO analysis using Ontologizer ?
Teacher 5 weeks ago, created an answer with at least 3 up-votes. For A: How to check the type of identifier from ensembl?
Teacher 6 weeks ago, created an answer with at least 3 up-votes. For A: How to check the type of identifier from ensembl?
Teacher 6 weeks ago, created an answer with at least 3 up-votes. For A: How to check the type of identifier from ensembl?
Scholar 6 weeks ago, created an answer that has been accepted. For A: How to interpret the result of GO analysis using Ontologizer ?
Teacher 7 weeks ago, created an answer with at least 3 up-votes. For A: How to check the type of identifier from ensembl?
Good Answer 11 weeks ago, created an answer that was upvoted at least 5 times. For A: Something better than GSEA?
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: How to check the type of identifier from ensembl?
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: How to check the type of identifier from ensembl?

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