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2
votes
1
reply
891
views
How to extract certain lines from gff3 file?
gff3 gene_ids extract
updated 3.7 years ago by ▴ 30 • written 3.7 years ago by ▴ 230
0
votes
1
reply
16k
views
Comment: C: Extract gene coordinates from GTF
5.3 years ago by Kurban ▴ 230
0
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0
replies
7.1k
views
Comment: C: Modifying Fasta file header
5.3 years ago by Kurban ▴ 230
0
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1
reply
7.1k
views
Comment: C: Modifying Fasta file header
5.3 years ago by Kurban ▴ 230
3
votes
8
replies
10k
views
summarize SNPs and indels information in vcf file
snp
updated 3.9 years ago by 45k • written 11.3 years ago by ▴ 230
0
votes
1
reply
20k
views
Comment: Comment: Retrieving Fasta Sequence Using Uniprot Id
updated 5.9 years ago by 45k • written 10.0 years ago by ▴ 230
1
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0
replies
7.8k
views
Comment: Comment: Error with Trinity installation
updated 2.8 years ago by 45k • written 10.0 years ago by ▴ 230
0
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0
replies
4.1k
views
Comment: A: how do KOG classification and KEGG analysis based on nucleotide sequences?
updated 6.0 years ago by 45k • written 10.1 years ago by ▴ 230
0
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0
replies
10k
views
Comment: C: summarize SNPs and indels information in vcf file
updated 6.1 years ago by 45k • written 11.3 years ago by ▴ 230
0
votes
3
replies
2.7k
views
There any tools for gene regulation network visualizing?
TF-TG connection regulatory network
7.7 years ago by Kurban ▴ 230
0
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0
replies
5.9k
views
Comment: C: How to cluster differential expressed genes from RNA-seq analysis?
8.6 years ago by Kurban ▴ 230
0
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1
reply
5.9k
views
Comment: C: How to cluster differential expressed genes from RNA-seq analysis?
8.6 years ago by Kurban ▴ 230
0
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1
reply
5.9k
views
Comment: C: How to cluster differential expressed genes from RNA-seq analysis?
8.6 years ago by Kurban ▴ 230
0
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1
reply
2.6k
views
Comment: C: How can I get DESeq2 heatmap result in tabular format?
8.7 years ago by Kurban ▴ 230
0
votes
3
replies
2.6k
views
How can I get DESeq2 heatmap result in tabular format?
RNA-Seq
updated 8.7 years ago by ★ 1.1k • written 8.7 years ago by ▴ 230
6
votes
8
replies
5.9k
views
How to cluster differential expressed genes from RNA-seq analysis?
RNA-Seq
8.7 years ago by Kurban ▴ 230
2
votes
2
replies
4.3k
views
align transcriptome to genome
alignment
updated 3.9 years ago by 45k • written 11.2 years ago by ▴ 230
0
votes
0
replies
1.2k
views
About TF-TG files
alignment
8.9 years ago by Kurban ▴ 230
0
votes
0
replies
6.1k
views
Comment: Comment: Removing redundant sequences
updated 3.0 years ago by 45k • written 9.0 years ago by ▴ 230
0
votes
2
replies
2.4k
views
is there any source for TF(transcription factor)-TG(target gene)?
sequence
updated 9.0 years ago by ★ 3.7k • written 9.0 years ago by ▴ 230
1
vote
0
replies
7.5k
views
Comment: C: JASPAR motifs download
9.0 years ago by Kurban ▴ 230
0
votes
0
replies
2.6k
views
Comment: Comment: transcription factor database
updated 3.7 years ago by 45k • written 10.9 years ago by ▴ 230
0
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1
reply
1.7k
views
Blast unigenes with set of protein sequences
Blast unigenes with protein
9.4 years ago by Kurban ▴ 230
0
votes
0
replies
2.3k
views
Using MISA analyzing SSRs
By MISA analyzing SSRs
updated 9.4 years ago by 20 • written 9.5 years ago by ▴ 230
1
vote
2
replies
2.7k
views
About low temperature insect transcriptome KEGG passway results
transcriptome KEGG passway
9.5 years ago by Kurban ▴ 230
1
vote
1
reply
1.9k
views
Difference between NCBI mRNA sequences and RNA-seq assembled sequences
NCBI RNA-Seq mrna sequencing
updated 9.5 years ago by 5.1k • written 9.5 years ago by ▴ 230
4
votes
4
replies
3.4k
views
GFOLD value cutoff
GFOLD
updated 2.9 years ago by 45k • written 10.4 years ago by ▴ 230
0
votes
0
replies
2.1k
views
is there any tools for get Entrez id and gene symbol for multiple transcriptome sequences
Entrez id and gene symbol
9.7 years ago by Kurban ▴ 230
0
votes
0
replies
1.9k
views
about kog functional classification
kog functional classification
9.7 years ago by Kurban ▴ 230
1
vote
2
replies
2.8k
views
after blast with uniprot.fasta file, how could I get the output file which included all blasted protein's all sequence header
blast
updated 3.3 years ago by 45k • written 10.0 years ago by ▴ 230
0
votes
1
reply
3.9k
views
sequence annotation for gene name or gene symbol
gene-name ENTREZ_ID DAVID
updated 3.3 years ago by 45k • written 10.0 years ago by ▴ 230
0
votes
0
replies
8.4k
views
Comment: Comment: align transcripts to genome
updated 3.8 years ago by 45k • written 11.1 years ago by ▴ 230
2
votes
5
replies
7.8k
views
Error with Trinity installation
trinity
updated 2.8 years ago by 45k • written 10.5 years ago by ▴ 230
0
votes
0
replies
2.1k
views
how to do GOSlim-Generic
GOSlim-Generic
10.0 years ago by Kurban ▴ 230
1
vote
5
replies
4.1k
views
how do KOG classification and KEGG analysis based on nucleotide sequences?
KOG-classification
updated 3.2 years ago by 45k • written 10.1 years ago by ▴ 230
0
votes
1
reply
4.1k
views
Comment: A: how do KOG classification and KEGG analysis based on nucleotide sequences?
10.1 years ago by Kurban ▴ 230
0
votes
4
replies
6.2k
views
about blast2go problem
blast2go
updated 3.7 years ago by 45k • written 11.0 years ago by ▴ 230
0
votes
1
reply
2.8k
views
Comment: Comment: Fisher Exact Test For TFs family
updated 3.2 years ago by 45k • written 10.2 years ago by ▴ 230
3
votes
3
replies
2.8k
views
Fisher Exact Test For TFs family
Fishers-Exact-Test
updated 3.2 years ago by 45k • written 10.2 years ago by ▴ 230
0
votes
3
replies
2.6k
views
Prediction Transcription Factor Families
Transcription-Factor
updated 3.1 years ago by 45k • written 10.7 years ago by ▴ 230
0
votes
2
replies
2.5k
views
how to identify same protien sequences in one fasta file
fasta protien-sequences
updated 2.9 years ago by 45k • written 10.4 years ago by ▴ 230
3
votes
3
replies
2.5k
views
i got two different trinity.fasta by using two version of trinity
trinity
updated 2.9 years ago by 45k • written 10.5 years ago by ▴ 230
2
votes
2
replies
5.6k
views
can I get a heat map from two groups of transcriptome data?
heat map
updated 2.8 years ago by 45k • written 10.5 years ago by ▴ 230
0
votes
0
replies
7.8k
views
Comment: Comment: error with trinity installation
updated 2.8 years ago by 45k • written 10.5 years ago by ▴ 230
0
votes
1
reply
1.9k
views
how do I check the sequencing reads
reads
updated 2.8 years ago by 45k • written 10.5 years ago by ▴ 230
0
votes
0
replies
4.8k
views
Comment: Comment: how much cpu and RAM needed to assemble transcriptome by using trinity
updated 2.8 years ago by 45k • written 10.5 years ago by ▴ 230
1
vote
2
replies
4.8k
views
how much cpu and RAM needed to assemble transcriptome by using trinity
trinity
updated 2.8 years ago by 45k • written 10.5 years ago by ▴ 230
1
vote
0
replies
67k
views
Comment: Comment: Tools To Find Gene Ontology Term Enrichment
updated 3.4 years ago by 45k • written 10.6 years ago by ▴ 230
0
votes
1
reply
3.5k
views
Comment: C: can i align paired end reads and orphan reads to reference sequences at the same
updated 4.7 years ago by 45k • written 10.6 years ago by ▴ 230
0
votes
3
replies
3.5k
views
Can I align paired end reads and orphan reads to reference sequences at the same time
alignment
updated 3.4 years ago by 45k • written 10.6 years ago by ▴ 230
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