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2
votes
1
reply
463
views
How to extract certain lines from gff3 file?
gff3 gene_ids extract
updated 2.1 years ago by ▴ 30 • written 2.1 years ago by ▴ 230
0
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1
reply
14k
views
Comment: C: Extract gene coordinates from GTF
3.8 years ago by Kurban ▴ 230
0
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0
replies
5.5k
views
Comment: C: Modifying Fasta file header
3.8 years ago by Kurban ▴ 230
0
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1
reply
5.5k
views
Comment: C: Modifying Fasta file header
3.8 years ago by Kurban ▴ 230
3
votes
8
replies
9.1k
views
summarize SNPs and indels information in vcf file
snp
updated 2.3 years ago by 43k • written 9.7 years ago by ▴ 230
0
votes
1
reply
15k
views
Comment: Comment: Retrieving Fasta Sequence Using Uniprot Id
updated 4.4 years ago by 43k • written 8.4 years ago by ▴ 230
1
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0
replies
6.9k
views
Comment: Comment: Error with Trinity installation
updated 14 months ago by 43k • written 8.4 years ago by ▴ 230
0
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0
replies
3.4k
views
Comment: A: how do KOG classification and KEGG analysis based on nucleotide sequences?
updated 4.4 years ago by 43k • written 8.5 years ago by ▴ 230
0
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0
replies
9.1k
views
Comment: C: summarize SNPs and indels information in vcf file
updated 4.5 years ago by 43k • written 9.7 years ago by ▴ 230
0
votes
3
replies
2.2k
views
There any tools for gene regulation network visualizing?
TF-TG connection regulatory network
6.1 years ago by Kurban ▴ 230
0
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0
replies
5.1k
views
Comment: C: How to cluster differential expressed genes from RNA-seq analysis?
7.1 years ago by Kurban ▴ 230
0
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1
reply
5.1k
views
Comment: C: How to cluster differential expressed genes from RNA-seq analysis?
7.1 years ago by Kurban ▴ 230
0
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1
reply
5.1k
views
Comment: C: How to cluster differential expressed genes from RNA-seq analysis?
7.1 years ago by Kurban ▴ 230
0
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1
reply
2.0k
views
Comment: C: How can I get DESeq2 heatmap result in tabular format?
7.1 years ago by Kurban ▴ 230
0
votes
3
replies
2.0k
views
How can I get DESeq2 heatmap result in tabular format?
RNA-Seq
updated 7.1 years ago by ★ 1.1k • written 7.1 years ago by ▴ 230
6
votes
8
replies
5.1k
views
How to cluster differential expressed genes from RNA-seq analysis?
RNA-Seq
7.1 years ago by Kurban ▴ 230
2
votes
2
replies
3.7k
views
align transcriptome to genome
alignment
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 230
0
votes
0
replies
953
views
About TF-TG files
alignment
7.4 years ago by Kurban ▴ 230
0
votes
0
replies
5.2k
views
Comment: Comment: Removing redundant sequences
updated 16 months ago by 43k • written 7.4 years ago by ▴ 230
0
votes
2
replies
2.0k
views
is there any source for TF(transcription factor)-TG(target gene)?
sequence
updated 7.4 years ago by ★ 3.6k • written 7.4 years ago by ▴ 230
1
vote
0
replies
6.1k
views
Comment: C: JASPAR motifs download
7.4 years ago by Kurban ▴ 230
0
votes
0
replies
2.1k
views
Comment: Comment: transcription factor database
updated 2.1 years ago by 43k • written 9.4 years ago by ▴ 230
0
votes
1
reply
1.5k
views
Blast unigenes with set of protein sequences
Blast unigenes with protein
7.8 years ago by Kurban ▴ 230
0
votes
0
replies
2.1k
views
Using MISA analyzing SSRs
By MISA analyzing SSRs
updated 7.8 years ago by 20 • written 8.0 years ago by ▴ 230
1
vote
2
replies
2.3k
views
About low temperature insect transcriptome KEGG passway results
transcriptome KEGG passway
7.9 years ago by Kurban ▴ 230
1
vote
1
reply
1.6k
views
Difference between NCBI mRNA sequences and RNA-seq assembled sequences
NCBI RNA-Seq mrna sequencing
updated 8.0 years ago by 5.1k • written 8.0 years ago by ▴ 230
4
votes
4
replies
2.8k
views
GFOLD value cutoff
GFOLD
updated 16 months ago by 43k • written 8.8 years ago by ▴ 230
0
votes
0
replies
1.9k
views
is there any tools for get Entrez id and gene symbol for multiple transcriptome sequences
Entrez id and gene symbol
8.1 years ago by Kurban ▴ 230
0
votes
0
replies
1.7k
views
about kog functional classification
kog functional classification
8.1 years ago by Kurban ▴ 230
1
vote
2
replies
2.4k
views
after blast with uniprot.fasta file, how could I get the output file which included all blasted protein's all sequence header
blast
updated 20 months ago by 43k • written 8.4 years ago by ▴ 230
0
votes
1
reply
3.1k
views
sequence annotation for gene name or gene symbol
gene-name ENTREZ_ID DAVID
updated 20 months ago by 43k • written 8.4 years ago by ▴ 230
0
votes
0
replies
7.1k
views
Comment: Comment: align transcripts to genome
updated 2.2 years ago by 43k • written 9.6 years ago by ▴ 230
2
votes
5
replies
6.9k
views
Error with Trinity installation
trinity
updated 14 months ago by 43k • written 8.9 years ago by ▴ 230
0
votes
0
replies
1.8k
views
how to do GOSlim-Generic
GOSlim-Generic
8.5 years ago by Kurban ▴ 230
1
vote
5
replies
3.4k
views
how do KOG classification and KEGG analysis based on nucleotide sequences?
KOG-classification
updated 19 months ago by 43k • written 8.6 years ago by ▴ 230
0
votes
1
reply
3.4k
views
Comment: A: how do KOG classification and KEGG analysis based on nucleotide sequences?
8.5 years ago by Kurban ▴ 230
0
votes
4
replies
5.3k
views
about blast2go problem
blast2go
updated 2.1 years ago by 43k • written 9.4 years ago by ▴ 230
0
votes
1
reply
2.2k
views
Comment: Comment: Fisher Exact Test For TFs family
updated 19 months ago by 43k • written 8.6 years ago by ▴ 230
3
votes
3
replies
2.2k
views
Fisher Exact Test For TFs family
Fishers-Exact-Test
updated 19 months ago by 43k • written 8.6 years ago by ▴ 230
0
votes
3
replies
2.0k
views
Prediction Transcription Factor Families
Transcription-Factor
updated 18 months ago by 43k • written 9.1 years ago by ▴ 230
0
votes
2
replies
2.1k
views
how to identify same protien sequences in one fasta file
fasta protien-sequences
updated 16 months ago by 43k • written 8.8 years ago by ▴ 230
3
votes
3
replies
2.1k
views
i got two different trinity.fasta by using two version of trinity
trinity
updated 15 months ago by 43k • written 8.9 years ago by ▴ 230
2
votes
2
replies
5.0k
views
can I get a heat map from two groups of transcriptome data?
heat map
updated 14 months ago by 43k • written 8.9 years ago by ▴ 230
0
votes
0
replies
6.9k
views
Comment: Comment: error with trinity installation
updated 14 months ago by 43k • written 8.9 years ago by ▴ 230
0
votes
1
reply
1.6k
views
how do I check the sequencing reads
reads
updated 14 months ago by 43k • written 8.9 years ago by ▴ 230
0
votes
0
replies
4.1k
views
Comment: Comment: how much cpu and RAM needed to assemble transcriptome by using trinity
updated 14 months ago by 43k • written 9.0 years ago by ▴ 230
1
vote
2
replies
4.1k
views
how much cpu and RAM needed to assemble transcriptome by using trinity
trinity
updated 14 months ago by 43k • written 9.0 years ago by ▴ 230
1
vote
0
replies
61k
views
Comment: Comment: Tools To Find Gene Ontology Term Enrichment
updated 21 months ago by 43k • written 9.0 years ago by ▴ 230
0
votes
1
reply
3.0k
views
Comment: C: can i align paired end reads and orphan reads to reference sequences at the same
updated 3.1 years ago by 43k • written 9.0 years ago by ▴ 230
0
votes
3
replies
3.0k
views
Can I align paired end reads and orphan reads to reference sequences at the same time
alignment
updated 21 months ago by 43k • written 9.0 years ago by ▴ 230
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