User: arshiaurora

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arshiaurora10
Reputation:
10
Status:
New User
Location:
United States
Last seen:
18 hours ago
Joined:
5 years ago
Email:
a**********@gmail.com

Posts by arshiaurora

<prev • 5 results • page 1 of 1 • next >
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Answer: A: Get the genes between certain chromosomal position
... You can do this using R - See below my code- library("biomaRt") listMarts() #use ensembl ensembl=useMart("ensembl") #BioMart databases can contain several datasets, for Ensembl every species is a different dataset. listDatasets(ensembl) #use homo ...
written 18 hours ago by arshiaurora10
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Comment: C: ABSOLUTE warning on cbs output
... Prameter to copy_num_type is set to total only. Here are the rest of the parameters.  sigma.p <- 0  max.sigma.h <- 0.02 min.ploidy <- 0.95 max.ploidy <- 10 primary.disease<-"kidney" platform<-'Illumina_WES' max.as.seg.count <- 1500 max.neg.genome <- 0 max.non.clonal <- ...
written 4.4 years ago by arshiaurora10
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ABSOLUTE warning on cbs output
... Hi, I am running ABSOLUTE on a cbs input file without the maf option. I get the following warning: In if (!is.na(res)) { ... : the condition has length > 1 and only the first element will be used I also get ploidy of an order of 7.(which is not expected) Can anyone help me with the warning ? ...
maf absoliute clonality purity written 4.4 years ago by arshiaurora10
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Comment: C: processing illumina signal count
... As you can see this cannot be processed by R package LUMI as I don't have the necessary BEAD columns.  ...
written 5.0 years ago by arshiaurora10
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processing illumina signal count
... Hi, I have downloaded an available Illumina data set from GSE. say GSExxx_non-normalized.txt. When I open this file I see Ilumina probes and two columnsfor each sample - Sample name and Detection P.val The values under Sample name are probe intensities I am assuming. And since they range from 200 ...
illumina process gse raw count written 5.0 years ago by arshiaurora10

Latest awards to arshiaurora

Popular Question 3.3 years ago, created a question with more than 1,000 views. For ABSOLUTE warning on cbs output
Popular Question 3.3 years ago, created a question with more than 1,000 views. For processing illumina signal count

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