User: BioRyder

gravatar for BioRyder
BioRyder170
Reputation:
170
Status:
Trusted
Location:
India
Last seen:
5 months, 3 weeks ago
Joined:
5 years, 10 months ago
Email:
s************@gmail.com

Posts by BioRyder

<prev • 52 results • page 2 of 6 • next >
0
votes
5
answers
2.5k
views
5
answers
Answer: A: RNA-Seq for DE analysis
... Hello, The below biostars post will help you to know about RNA seq and DE. https://www.biostars.org/p/174376/#174800 ...
written 4.2 years ago by BioRyder170
0
votes
1
answer
3.9k
views
1
answers
Comment: C: Canu Pacbio assembly
... In last test case, canu command failed with the following error message (job submitted with sbatch command instead of srun) -------------------- -- Starting command on Thu Mar 24 14:55:30 2016 with 256586.2 GB free disk space -- sbatch --mem=64g --cpus-per-task=16 -D `pwd` -J "meryl_date ...
written 4.3 years ago by BioRyder170
0
votes
1
answer
1.3k
views
1
answers
Answer: A: miRNA Target Site prediction from unpaired data
... You can use [microRNA][1].org to see the list of miRNA target if you are having list of miRNA (Human).This application is online and does not need mRNA or UTR region to predict the miRNA target reads. [miranda][2] is an offline tool which used for miRNA target prediction.In miranda you have to prov ...
written 4.3 years ago by BioRyder170
0
votes
1
answer
3.9k
views
1
answers
Comment: C: Canu Pacbio assembly
... there was no error message and program got exit. ...
written 4.3 years ago by BioRyder170
1
vote
1
answer
3.9k
views
1
answer
Canu Pacbio assembly
... Hello All, I was trying to use canu assembler for pacbio read.In test case-1 I have used 3Gb data (not used HPC) and all the process, correction ,trimming & assembly, has finished in three days.When I used 30Gb data in HPC machine with SLURM , assembly process got failed after two days of run. ...
assembly written 4.3 years ago by BioRyder170 • updated 4.3 years ago by Philipp Bayer6.7k
0
votes
1
answer
1.1k
views
1
answers
Comment: C: Other RNA removal from RNA-Seq Data
... Yes, this is normal procedure we do for the removal of other RNA from RNA Seq data. ...
written 4.3 years ago by BioRyder170
0
votes
2
answers
6.5k
views
2
answers
Answer: A: bcl2fastq-v2 samplesheet format for dual index run
... Hello jacobnix, For dual index, Sample sheet format should be in below format .While doing bcltofastq conversion you should use the base mask as it like : -- use-bases-mask Y*,I*,I*,Y* . (Note :  each  I for Index 1 & index 2 respectively.) Sample sheet Format : [Data] Lane,Sample_ID,Sample_N ...
written 4.4 years ago by BioRyder170
0
votes
3
answers
7.8k
views
3
answers
Comment: C: trimming the paired end reads with cutadapt
... Hello Ryan, Yes, you are right. they have to update their documentation.  ...
written 4.4 years ago by BioRyder170
1
vote
3
answers
7.8k
views
3
answers
Comment: C: trimming the paired end reads with cutadapt
... yes, for 5' adapter you have to use -g option. ...
written 4.4 years ago by BioRyder170
3
votes
3
answers
7.8k
views
3
answers
Answer: A: trimming the paired end reads with cutadapt
... Cut adapt is having only the following option. Adapter type Command-line option 3’ adapter -a ADAPTER 5’ adapter -g ADAPTER Anchored 3’ adapter -a ADAPTER$ Anchored 5’ adapter -g ^ADAPTER 5’ or 3’ (both possible) -b ADAPTER ...
written 4.4 years ago by BioRyder170

Latest awards to BioRyder

Great Question 11 months ago, created a question with more than 5,000 views. For bcl2fastq-V2 base mask issue for six and eight barcode length
Popular Question 11 months ago, created a question with more than 1,000 views. For bcl to fastq convert for only two lane
Popular Question 16 months ago, created a question with more than 1,000 views. For bcl to fastq Conversion
Supporter 17 months ago, voted at least 25 times.
Teacher 22 months ago, created an answer with at least 3 up-votes. For A: trimming the paired end reads with cutadapt
Popular Question 2.9 years ago, created a question with more than 1,000 views. For bcl2fastq-V2 base mask issue for six and eight barcode length
Popular Question 2.9 years ago, created a question with more than 1,000 views. For bcl to fastq Conversion
Popular Question 2.9 years ago, created a question with more than 1,000 views. For Canu Pacbio assembly
Popular Question 2.9 years ago, created a question with more than 1,000 views. For base mask option in bcl to fastq conversion
Popular Question 3.2 years ago, created a question with more than 1,000 views. For Canu Pacbio assembly
Popular Question 3.5 years ago, created a question with more than 1,000 views. For Canu Pacbio assembly
Popular Question 3.6 years ago, created a question with more than 1,000 views. For bcl2fastq-V2 base mask issue for six and eight barcode length
Popular Question 3.7 years ago, created a question with more than 1,000 views. For Bcl to fastq conversion problem in bcl2fastq-2.17
Teacher 4.0 years ago, created an answer with at least 3 up-votes. For A: trimming the paired end reads with cutadapt
Teacher 4.2 years ago, created an answer with at least 3 up-votes. For A: trimming the paired end reads with cutadapt
Autobiographer 4.4 years ago, has more than 80 characters in the information field of the user's profile.
Scholar 4.4 years ago, created an answer that has been accepted. For A: bcl2fastq-V2 How to skip some line
Scholar 4.4 years ago, created an answer that has been accepted. For A: bcl2fastq-V2 How to skip some line

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1584 users visited in the last hour