User: Charles Plessy

gravatar for Charles Plessy
Charles Plessy2.7k
Reputation:
2,700
Status:
Trusted
Location:
Japan
Website:
http://population-tran...
Last seen:
3 days, 20 hours ago
Joined:
5 years, 9 months ago
Email:
c***************@plessy.org

Molecular biologist, open scientist and Debian developer.

Posts by Charles Plessy

<prev • 285 results • page 2 of 29 • next >
1
vote
0
answers
1.3k
views
0
answers
Comment: C: How to merge quality trimmed interlaced reads?
... Have you looked at the software listed in the post "[Tools to merge overlapping paired-end reads](https://www.biostars.org/p/225683/)"? ...
written 2.2 years ago by Charles Plessy2.7k
0
votes
0
answers
400
views
0
answers
Comment: C: Login with identity providers: can we have an alternative to Google?
... Hello Charles Plessy! We believe that this post does not fit the main topic of this site. No need since there is biostar.slack.com. For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with. If you disagree please tell ...
written 2.2 years ago by Charles Plessy2.7k
0
votes
0
answers
400
views
0
answers
Comment: C: Login with identity providers: can we have an alternative to Google?
... Cool; I missed it; thank you. Closing this post accordingly. ...
written 2.2 years ago by Charles Plessy2.7k
1
vote
0
answers
400
views
0
answers
(Closed) Login with identity providers: can we have an alternative to Google?
... It was convenient to use GitHub as an identity provider. Will it have a chance to come back? Alternatively, how about GitLab or ORCID? ...
meta written 2.2 years ago by Charles Plessy2.7k
0
votes
1
answer
856
views
1
answers
Comment: C: suggestions to compare gene counts
... You have only one file, but with it, you generated multiple expression tables. Have you tried to compare the expression tables using software for differential gene expression ? ...
written 2.3 years ago by Charles Plessy2.7k
0
votes
1
answer
856
views
1
answers
Answer: A: suggestions to compare gene counts
... The field of [differential expression analysis](https://en.wikipedia.org/wiki/Gene_expression_profiling) is quite mature now, so I recommend to first look at existing solutions, that are based on one or two decades of experience. In case you do not know where to start and you are fine using [R](htt ...
written 2.3 years ago by Charles Plessy2.7k
0
votes
1
answer
1.8k
views
1
answers
Answer: A: install genewise (wise2.4.1) on linux
... The `INSTALL` files states (edited for brevity): In the existing tar ball go: - make all in src directory - cd into dyc go make dyc - on linux this will fail. Then go make linux Now go: - copy dyc somewhere on your path; setenv WISECONFIGDIR to $wise-cvs-home/wi ...
written 2.3 years ago by Charles Plessy2.7k
5
votes
4
answers
4.8k
views
4
answers
Answer: A: HOw to merge multifasta sequence into a single sequence having only one header?
... Using the [union](http://emboss.sourceforge.net/apps/cvs/emboss/apps/union.html) command from the [EMBOSS](http://emboss.sourceforge.net/) package: $ cat test.fasta >seq1 AAAATTGGG >seq2 GGCCCTTTT >seq3 AAATGGGG $ union -filter test.fasta >seq1 ...
written 2.3 years ago by Charles Plessy2.7k
0
votes
1
answer
821
views
1
answers
Comment: C: How can I install xml development headers (version 2.9.1) and xz development he
... > xz development headers (version 5.1.1 tested) In doubt, you can also query the APT cache for package descriptions. $ apt search xz development files Sorting... Done Full Text Search... Done devscripts/stable,now 2.17.6+deb9u1 amd64 [installed] scripts to make the life of ...
written 2.4 years ago by Charles Plessy2.7k
1
vote
1
answer
1.5k
views
1
answers
Answer: A: Demultiplex pair-end fastq reads with barcode 2 in the identifier line
... How about pasting your first barcode to the reads, and demultiplexing with virtual barcodes that represent all the combinations of barcode 1 and 2 ? Here is one way to paste. paste -d '' <(grep '^@' test.fq | sed s/.*:// | perl -ne 'chomp;print"\n$_\n\n","I"x(length($_)),"\n"') test.fq ...
written 2.4 years ago by Charles Plessy2.7k

Latest awards to Charles Plessy

Popular Question 9 days ago, created a question with more than 1,000 views. For Parsing GENCODE GTF to simpler BED files: am I reinventing the wheel ?
Appreciated 11 months ago, created a post with more than 5 votes. For Patch ERCC spike sequences to get their real 5-prime ends.
Popular Question 11 months ago, created a question with more than 1,000 views. For Parsing GENCODE GTF to simpler BED files: am I reinventing the wheel ?
Popular Question 11 months ago, created a question with more than 1,000 views. For Patch ERCC spike sequences to get their real 5-prime ends.
Popular Question 20 months ago, created a question with more than 1,000 views. For Patch ERCC spike sequences to get their real 5-prime ends.
Popular Question 20 months ago, created a question with more than 1,000 views. For Parsing GENCODE GTF to simpler BED files: am I reinventing the wheel ?
Scholar 20 months ago, created an answer that has been accepted. For A: Bedtools trouble with double digit chromosomes
Teacher 20 months ago, created an answer with at least 3 up-votes. For A: fastq compression tools of choice
Scholar 22 months ago, created an answer that has been accepted. For A: Bedtools trouble with double digit chromosomes
Scholar 22 months ago, created an answer that has been accepted. For A: Map human cell line RNA-seq data to virus
Popular Question 23 months ago, created a question with more than 1,000 views. For Parsing GENCODE GTF to simpler BED files: am I reinventing the wheel ?
Popular Question 2.0 years ago, created a question with more than 1,000 views. For Parsing GENCODE GTF to simpler BED files: am I reinventing the wheel ?
Popular Question 2.1 years ago, created a question with more than 1,000 views. For Parsing GENCODE GTF to simpler BED files: am I reinventing the wheel ?
Teacher 2.1 years ago, created an answer with at least 3 up-votes. For A: fastq compression tools of choice
Popular Question 2.3 years ago, created a question with more than 1,000 views. For Patch ERCC spike sequences to get their real 5-prime ends.
Teacher 2.5 years ago, created an answer with at least 3 up-votes. For A: fastq compression tools of choice
Scholar 2.6 years ago, created an answer that has been accepted. For A: Bedtools trouble with double digit chromosomes
Teacher 2.6 years ago, created an answer with at least 3 up-votes. For A: fastq compression tools of choice
Teacher 2.6 years ago, created an answer with at least 3 up-votes. For A: fastq compression tools of choice
Popular Question 2.9 years ago, created a question with more than 1,000 views. For Patch ERCC spike sequences to get their real 5-prime ends.
Scholar 2.9 years ago, created an answer that has been accepted. For A: Bedtools trouble with double digit chromosomes
Teacher 2.9 years ago, created an answer with at least 3 up-votes. For A: fastq compression tools of choice
Teacher 2.9 years ago, created an answer with at least 3 up-votes. For A: fastq compression tools of choice
Good Answer 2.9 years ago, created an answer that was upvoted at least 5 times. For A: Develop an R package for CRAN vs BioConductor

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1526 users visited in the last hour