User: anjali.gopal91
anjali.gopal91 • 50
- Reputation:
- 50
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- New User
- Location:
- United States
- Last seen:
- 4 years, 9 months ago
- Joined:
- 6 years, 5 months ago
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- a*************@gmail.com
Posts by anjali.gopal91
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... I haven't really worked with pooled data (if that's what you mean by multi-sample SNP calling) but I've been using SNVer, and it works great. One thing I really like about it is that it lets you define the ploidy of your sample, which is helpful for me since I work with haploid yeast data a lot. Sam ...
written 6.1 years ago by
anjali.gopal91 • 50
• updated
15 months ago by
_r_am ♦ 32k
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... I'm working on a project where I'm aligning fastq files that contain sequence information about a series of small ORfs (usually ~2 kb in size). These were all contained in bacterial entry vectors (i.e., plasmids).
I'm using bowtie2 to align these sequences, but would like to determine the pileups s ...
written 6.4 years ago by
anjali.gopal91 • 50
• updated
6.4 years ago by
Devon Ryan ♦ 98k
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... Never mind, I fixed this. Turns out my bam file was not sorted.
If anyone else has this error, you can get around it by:
samtools sort [filename].bam [output]
...
written 6.4 years ago by
anjali.gopal91 • 50
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... Hi all,
I'm pretty new to bioinformatics, so please bear with me if I'm using incorrect terminology.
I'm trying to perform variant calling on a series of genes (NOT a whole genome). I have a fasta file that has reference sequences for all of these genes, and a series of fastq files for reads. I al ...
written 6.4 years ago by
anjali.gopal91 • 50
• updated
4.5 years ago by
rse • 90
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