Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
3.9k
views
Comment: C: Visualizing alignment of kallisto .bam files to hg19 (and custom plasmids)
5.6 years ago by Kristin Muench ▴ 620
0
votes
0
replies
3.9k
views
Comment: C: Visualizing alignment of kallisto .bam files to hg19 (and custom plasmids)
5.6 years ago by Kristin Muench ▴ 620
0
votes
0
replies
3.9k
views
Comment: C: Visualizing alignment of kallisto .bam files to hg19 (and custom plasmids)
5.6 years ago by Kristin Muench ▴ 620
0
votes
0
replies
3.9k
views
Comment: C: Visualizing alignment of kallisto .bam files to hg19 (and custom plasmids)
5.6 years ago by Kristin Muench ▴ 620
0
votes
0
replies
3.9k
views
Comment: C: Visualizing alignment of kallisto .bam files to hg19 (and custom plasmids)
5.6 years ago by Kristin Muench ▴ 620
2
votes
7
replies
3.9k
views
Visualizing alignment of kallisto .bam files to hg19 (and custom plasmids)
IGV kallisto RNA-Seq
updated 5.6 years ago by ▴ 120 • written 5.6 years ago by ▴ 620
10
votes
36
replies
5.8k
views
Design in DESeq: Can you combine explicit and implicit batch effect correction in (SVA+Metadata Variables)?
SVA batch-effect DESeq2 R
updated 3 days ago by 43k • written 5.7 years ago by ▴ 620
0
votes
1
reply
15k
views
Comment: A: How to download human reference transcriptome (hg19)
5.7 years ago by Kristin Muench ▴ 620
0
votes
0
replies
5.8k
views
Comment: C: Design in DESeq: Can you combine explicit and implicit batch effect correction i
5.7 years ago by Kristin Muench ▴ 620
0
votes
1
reply
5.8k
views
Comment: C: Design in DESeq: Can you combine explicit and implicit batch effect correction i
5.7 years ago by Kristin Muench ▴ 620
1
vote
0
replies
3.8k
views
Answer: A: Heat map of DE genes identified in Graph based clustering of ScRNA-Seq
5.7 years ago by Kristin Muench ▴ 620
0
votes
1
reply
5.8k
views
Comment: C: Design in DESeq: Can you combine explicit and implicit batch effect correction i
5.7 years ago by Kristin Muench ▴ 620
0
votes
1
reply
8.0k
views
Comment: C: How many reads should I expect for paired end reads when coverage = 30 million?
5.7 years ago by Kristin Muench ▴ 620
1
vote
0
replies
8.0k
views
Comment: C: How many reads should I expect for paired end reads when coverage = 30 million?
5.7 years ago by Kristin Muench ▴ 620
0
votes
1
reply
5.8k
views
Comment: C: Design in DESeq: Can you combine explicit and implicit batch effect correction i
5.7 years ago by Kristin Muench ▴ 620
0
votes
0
replies
5.8k
views
Comment: C: Design in DESeq: Can you combine explicit and implicit batch effect correction i
5.7 years ago by Kristin Muench ▴ 620
0
votes
1
reply
4.5k
views
Comment: C: kallisto pseudoaligned bam files to IGV
5.7 years ago by Kristin Muench ▴ 620
0
votes
1
reply
12k
views
Comment: C: Making a heatmap: sample vs. fold change
5.7 years ago by Kristin Muench ▴ 620
4
votes
6
replies
12k
views
Making a heatmap: sample vs. fold change
RNA-Seq R heatmap DESeq2
updated 2.6 years ago by ▴ 10 • written 5.7 years ago by ▴ 620
0
votes
0
replies
1.9k
views
Comment: C: Help understanding the meaning of variables in DESeq design matrix
5.7 years ago by Kristin Muench ▴ 620
3
votes
2
replies
1.9k
views
Help understanding the meaning of variables in DESeq design matrix
DESeq2 RNA-Seq R
updated 5.7 years ago by 104k • written 5.7 years ago by ▴ 620
0
votes
0
replies
6.8k
views
Comment: C: Multi-factor analysis with DESeq: which approach is correct?
5.7 years ago by Kristin Muench ▴ 620
0
votes
1
reply
6.8k
views
Comment: C: Multi-factor analysis with DESeq: which approach is correct?
5.7 years ago by Kristin Muench ▴ 620
0
votes
1
reply
6.8k
views
Comment: C: Multi-factor analysis with DESeq: which approach is correct?
5.7 years ago by Kristin Muench ▴ 620
4
votes
6
replies
6.8k
views
Multi-factor analysis with DESeq: which approach is correct?
RNA-Seq DESeq2 R
updated 5.7 years ago by 104k • written 5.7 years ago by ▴ 620
18
votes
9
replies
8.0k
views
Error in (function...) thrown by WGCNA tutorial (R)
WGCNA RNA-Seq R
updated 5.9 years ago by ▴ 90 • written 6.1 years ago by ▴ 620
0
votes
1
reply
4.4k
views
Comment: C: Kallisto will not produce .bam files
6.0 years ago by Kristin Muench ▴ 620
9
votes
15
replies
4.4k
views
Kallisto will not produce .bam files
kallisto RNA-Seq
updated 6.0 years ago by 87k • written 6.0 years ago by ▴ 620
33
votes
5
replies
16k
views
9 follow
Forum: How do I explain to my non-bioinformatician labmates how to interpret principal components?
RNA-Seq communication analysis pca
updated 20 months ago by 43k • written 8.3 years ago by ▴ 620
10
votes
6
replies
5.8k
views
Should kallisto take hours to run?
kallisto RNA-Seq
6.1 years ago by Kristin Muench ▴ 620
0
votes
2
replies
5.8k
views
Comment: C: Should kallisto take hours to run?
6.1 years ago by Kristin Muench ▴ 620
0
votes
1
reply
5.8k
views
Comment: C: Should kallisto take hours to run?
6.1 years ago by Kristin Muench ▴ 620
1
vote
1
reply
8.0k
views
Comment: C: Error in (function...) thrown by WGCNA tutorial (R)
6.1 years ago by Kristin Muench ▴ 620
1
vote
0
replies
4.1k
views
Comment: C: Adding plasmid sequences to gtf file
6.1 years ago by Kristin Muench ▴ 620
0
votes
0
replies
3.1k
views
Comment: C: [STAR] Why are there so many more mapped reads than unmapped reads in my .sam ou
6.1 years ago by Kristin Muench ▴ 620
2
votes
6
replies
3.1k
views
[STAR] Why are there so many more mapped reads than unmapped reads in my .sam output file?
RNA-Seq star
updated 6.1 years ago by ★ 1.3k • written 6.2 years ago by ▴ 620
0
votes
0
replies
3.1k
views
Comment: C: [STAR] Why are there so many more mapped reads than unmapped reads in my .sam ou
6.1 years ago by Kristin Muench ▴ 620
0
votes
1
reply
3.1k
views
Comment: C: [STAR] Why are there so many more mapped reads than unmapped reads in my .sam ou
6.1 years ago by Kristin Muench ▴ 620
0
votes
1
reply
4.1k
views
Comment: C: Adding plasmid sequences to gtf file
6.1 years ago by Kristin Muench ▴ 620
0
votes
0
replies
4.1k
views
Comment: C: Adding plasmid sequences to gtf file
6.1 years ago by Kristin Muench ▴ 620
4
votes
6
replies
4.1k
views
Adding plasmid sequences to gtf file
RNA-Seq
6.2 years ago by Kristin Muench ▴ 620
0
votes
0
replies
2.5k
views
Comment: C: How to align .fastq files to an Addgene vector sequence?
6.2 years ago by Kristin Muench ▴ 620
4
votes
6
replies
2.5k
views
How to align .fastq files to an Addgene vector sequence?
RNA-Seq alignment
6.2 years ago by Kristin Muench ▴ 620
0
votes
0
replies
2.5k
views
Comment: C: How to align .fastq files to an Addgene vector sequence?
6.2 years ago by Kristin Muench ▴ 620
0
votes
0
replies
2.5k
views
Comment: C: How to align .fastq files to an Addgene vector sequence?
6.2 years ago by Kristin Muench ▴ 620
0
votes
0
replies
3.3k
views
RNA-Seq Normalization and Batch Correction
RNA-Seq R
6.7 years ago by Kristin Muench ▴ 620
0
votes
0
replies
5.8k
views
Comment: C: What the heck is going on with this DESeq2 MA Plot?
6.8 years ago by Kristin Muench ▴ 620
0
votes
6
replies
2.6k
views
Could a "complete" RNA-Seq database feasibly exclude some protein-coding transcripts?
RNA-Seq
updated 2.0 years ago by 43k • written 9.2 years ago by ▴ 620
0
votes
0
replies
1.5k
views
Is there a way to normalize for input library size/total RNA in microarray?
microarray
7.3 years ago by Kristin Muench ▴ 620
3
votes
2
replies
2.4k
views
Is it possible to compare 3SEQ and RNA-Seq data?
RNA-Seq 3SEQ DE
updated 2.3 years ago by 43k • written 9.7 years ago by ▴ 620
130 results • Page 2 of 3
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6