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questions
2
votes
5
replies
681
views
what's the genomic location and name of gene responsible for orange and black patches in calico cats
genomes
updated 4 days ago by
Jesse
▴ 740 • written 6 days ago by
Ann
★ 2.4k
0
votes
2
replies
2.8k
views
edgeR not available for Mavericks and R 3.1
software-error
RNA-Seq
edgeR
R
updated 2.6 years ago by
Ram
43k • written 10.0 years ago by
Ann
★ 2.4k
3
votes
1
reply
2.8k
views
what's the best kmer size for sailfish
RNA-Seq
sailfish
updated 4.7 years ago by
Biostar
20 • written 9.9 years ago by
Ann
★ 2.4k
15
votes
7
replies
9.5k
views
how to use a bed file with htseq-count
RNA-Seq
htseq-count
updated 2.5 years ago by
Ram
43k • written 9.9 years ago by
Ann
★ 2.4k
7
votes
4
replies
1.7k
views
what should a SAM/BAM record contain when there are no quality scores
samtools
SAM
BAM
updated 6.7 years ago by
jkbonfield
★ 1.2k • written 6.7 years ago by
Ann
★ 2.4k
19
votes
12
replies
7.7k
views
9 follow
What is first publication/mention of term RNA-seq
RNA-Seq
updated 2.6 years ago by
Ram
43k • written 10.0 years ago by
Ann
★ 2.4k
7
votes
3
replies
1.7k
views
testing biostars igb tag
igb
updated 2.3 years ago by
Ram
43k • written 9.6 years ago by
Ann
★ 2.4k
9
votes
11
replies
4.8k
views
9 follow
PhD programs in bioinformatics and genomics
education
phd
updated 12 months ago by
Ram
43k • written 7.5 years ago by
Ann
★ 2.4k
4
votes
10
replies
2.7k
views
PileOMeth double counting when paired-end reads overlap?
PileOMeth
Bisulfite
methylation
7.5 years ago by
Ann
★ 2.4k
0
votes
2
replies
2.5k
views
need to identify CDS (translation) for gene models predicted by Cufflinks and Stringtie
RNA-Seq
stringtie
cufflinks
updated 21 months ago by
Ram
43k • written 8.3 years ago by
Ann
★ 2.4k
6
votes
7
replies
6.3k
views
best alignment tool for Ion Torrent data
chloroplast
genome
iontorrent
updated 20 months ago by
Ram
43k • written 8.4 years ago by
Ann
★ 2.4k
5
votes
4
replies
2.2k
views
strange coordinates for Augustus-predicted gene
genefinder
augustus
updated 20 months ago by
Ram
43k • written 8.4 years ago by
Ann
★ 2.4k
7
votes
7
replies
6.2k
views
R packages for gene regulatory networks from time series data
RNA-Seq
ChIP-Seq
R
updated 2.3 years ago by
Ram
43k • written 9.5 years ago by
Ann
★ 2.4k
2
votes
3
replies
2.8k
views
tophat GTF 2.2 format question
RNA-Seq
tophat
updated 3.1 years ago by
Ram
43k • written 9.4 years ago by
Ann
★ 2.4k
5
votes
10
replies
6.4k
views
need to separate read1 and read2 to run tophat2
RNA-Seq
tophat2
pairedend
updated 2.1 years ago by
Ram
43k • written 9.4 years ago by
Ann
★ 2.4k
11
votes
4
replies
6.1k
views
R package used for PCA plotting in a paper (rice RNA-Seq)
PCA
RNA-Seq
R
updated 2.1 years ago by
Ram
43k • written 9.4 years ago by
Ann
★ 2.4k
1
vote
1
reply
2.4k
views
looking for plant ChIP-Seq data sets to try DiffBind (need replicates)
RNA-Seq
DiffBind
R
ChIP-Seq
updated 3.1 years ago by
Ram
43k • written 9.5 years ago by
Ann
★ 2.4k
5
votes
3
replies
3.4k
views
how to get -nms for bedtools
bedtools
updated 2.4 years ago by
Ram
43k • written 9.7 years ago by
Ann
★ 2.4k
2
votes
3
replies
2.7k
views
tophat2 reported the same alignment twice for the same read (paired end data)
paired-end
RNA-Seq
tophat
tophat2
igb
updated 2.4 years ago by
Ram
43k • written 9.8 years ago by
Ann
★ 2.4k
1
vote
1
reply
2.0k
views
tools for writing edge case BAM Files for testing
RNA-Seq
python
bam
updated 2.4 years ago by
Ram
43k • written 9.8 years ago by
Ann
★ 2.4k
3
votes
3
replies
2.7k
views
why tophat finds overlong introns?
alignment
RNA-Seq
splicing
tophat
updated 2.6 years ago by
Ram
43k • written 10.0 years ago by
Ann
★ 2.4k
1
vote
0
replies
2.4k
views
CuffLinks predicts too long UTR for overlapping genes
cufflinks
RNA-Seq
TAIR10
arabidopsis
updated 10.0 years ago by
Istvan Albert
100k • written 10.0 years ago by
Ann
★ 2.4k
6
votes
9
replies
3.2k
views
How to find out what build a galaxy site is running
galaxy
RNA-Seq
ChIP-Seq
usegalaxy
updated 10.0 years ago by
martenson
▴ 380 • written 10.0 years ago by
Ann
★ 2.4k
23 results • Page
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