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2
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0
replies
3.1k
views
Answer: A: Can IGB load BED 6+3 files?
9.0 years ago by Ann ★ 2.4k
0
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1
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2.6k
views
Answer: Answer: is there a way to get splice sites from BLAST results?
updated 23 months ago by 43k • written 9.1 years ago by ★ 2.4k
2
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1
reply
4.3k
views
Answer: Answer: Which genome browser to display bacterial draft genomes?
updated 23 months ago by 43k • written 9.1 years ago by ★ 2.4k
8
votes
0
replies
1.8k
views
News: Please help! IGB grant and survey
igb ChIP-Seq RNA-Seq genome
updated 23 months ago by 43k • written 9.1 years ago by ★ 2.4k
2
votes
3
replies
2.8k
views
tophat GTF 2.2 format question
RNA-Seq tophat
updated 3.0 years ago by 43k • written 9.3 years ago by ★ 2.4k
0
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1
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5.0k
views
Comment: Comment: Biology undergrad taking bioinformatics new to python need HELP with problem!
updated 24 months ago by 43k • written 9.2 years ago by ★ 2.4k
0
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1
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8.2k
views
Comment: Comment: How to convert GTF format to BED format?
updated 2.0 years ago by 43k • written 9.2 years ago by ★ 2.4k
7
votes
1
reply
2.7k
views
News: Integrated Genome Browser version 8.3 released - new native installer
ChIP-Seq RNA-Seq igv igb
updated 2.0 years ago by 43k • written 9.2 years ago by ★ 2.4k
0
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1
reply
3.0k
views
Comment: Comment: Computational requirement to host a genome browser
updated 2.1 years ago by 43k • written 9.3 years ago by ★ 2.4k
0
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1
reply
3.0k
views
Comment: C: Computational requirement to host a genome browser
9.3 years ago by Ann ★ 2.4k
1
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1
reply
3.0k
views
Answer: Answer: Computational requirement to host a genome browser
updated 2.1 years ago by 43k • written 9.3 years ago by ★ 2.4k
0
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0
replies
2.8k
views
Comment: Comment: tophat GTF 2.2 format question
updated 3.0 years ago by 43k • written 9.3 years ago by ★ 2.4k
5
votes
10
replies
6.3k
views
need to separate read1 and read2 to run tophat2
RNA-Seq tophat2 pairedend
updated 2.1 years ago by 43k • written 9.4 years ago by ★ 2.4k
0
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0
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2.8k
views
Comment: Comment: tophat GTF 2.2 format question
updated 3.0 years ago by 43k • written 9.3 years ago by ★ 2.4k
0
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1
reply
6.3k
views
Comment: Comment: need to separate read1 and read2 to run tophat2
updated 2.1 years ago by 43k • written 9.4 years ago by ★ 2.4k
0
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0
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4.1k
views
Answer: A: How to create your genome in IGV?
9.4 years ago by Ann ★ 2.4k
0
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0
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2.7k
views
Comment: Comment: Integrate a Genome Browser into a Java application
updated 2.1 years ago by 43k • written 9.4 years ago by ★ 2.4k
11
votes
4
replies
6.1k
views
R package used for PCA plotting in a paper (rice RNA-Seq)
PCA RNA-Seq R
updated 2.1 years ago by 43k • written 9.4 years ago by ★ 2.4k
4
votes
2
replies
2.7k
views
Answer: Answer: Integrate a Genome Browser into a Java application
updated 2.1 years ago by 43k • written 9.4 years ago by ★ 2.4k
0
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0
replies
6.7k
views
Answer: Answer: Should I log-transform microarray gene expression data before applying PCA?
updated 2.1 years ago by 43k • written 9.4 years ago by ★ 2.4k
2
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0
replies
3.8k
views
Answer: Answer: IGB- genome sequence in sequence viewer just shows dashes
updated 2.1 years ago by 43k • written 9.4 years ago by ★ 2.4k
0
votes
2
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2.9k
views
Comment: Comment: Color / mark specific sequence bases differently in IGV
updated 2.1 years ago by 43k • written 9.4 years ago by ★ 2.4k
4
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0
replies
4.9k
views
Answer: Answer: viewing BED Graph files on the IGB
updated 2.1 years ago by 43k • written 9.4 years ago by ★ 2.4k
2
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0
replies
6.0k
views
Answer: A: what are the control samples when using MACS to find ChiP-seq peaks?
9.4 years ago by Ann ★ 2.4k
8
votes
0
replies
25k
views
Answer: Answer: Genomics is not Special. Computational Biologists are reinventing the wheel for
updated 2.2 years ago by 43k • written 9.4 years ago by ★ 2.4k
3
votes
2
replies
1.8k
views
Forum: request for feature - show view count
feature
updated 2.2 years ago by 43k • written 9.4 years ago by ★ 2.4k
2
votes
0
replies
2.2k
views
News: Learn how to use IGB with Galaxy for RNA-Seq - Nov 12, 2014
igb galaxy RNA-Seq
updated 2.2 years ago by 43k • written 9.4 years ago by ★ 2.4k
0
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0
replies
5.6k
views
Comment: C: 23andme: Convert Human Assembly Build 36 to Build 37
9.4 years ago by Ann ★ 2.4k
3
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0
replies
2.4k
views
Answer: Answer: visualize tiling array file to IGB
updated 2.2 years ago by 43k • written 9.5 years ago by ★ 2.4k
0
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1
reply
5.5k
views
Answer: Answer: RNA probe ids from affymetrix
updated 2.2 years ago by 43k • written 9.5 years ago by ★ 2.4k
1
vote
0
replies
3.0k
views
Answer: Answer: Microarray data analysis for detecting alternative splicing
updated 3.0 years ago by 43k • written 9.5 years ago by ★ 2.4k
1
vote
1
reply
3.0k
views
Answer: Answer: Microarray data analysis for detecting alternative splicing
updated 3.0 years ago by 43k • written 9.5 years ago by ★ 2.4k
1
vote
1
reply
2.4k
views
looking for plant ChIP-Seq data sets to try DiffBind (need replicates)
RNA-Seq DiffBind R ChIP-Seq
updated 3.1 years ago by 43k • written 9.5 years ago by ★ 2.4k
1
vote
0
replies
6.1k
views
Comment: C: R packages for gene regulatory networks from time series data
9.5 years ago by Ann ★ 2.4k
0
votes
1
reply
6.1k
views
Comment: C: R packages for gene regulatory networks from time series data
9.5 years ago by Ann ★ 2.4k
8
votes
8
replies
1.8k
views
Forum: links back from twitter problem
meta twitter
updated 13 months ago by 43k • written 9.5 years ago by ★ 2.4k
3
votes
0
replies
1.7k
views
Forum: IGB hacks - trying out different colors for samples
genome-browser igv igb
updated 13 months ago by 43k • written 9.5 years ago by ★ 2.4k
1
vote
0
replies
1.3k
views
News: Still some places available in IGB live tutorial - just started
igb genomebrowser splicing BAM
updated 2.2 years ago by 43k • written 9.5 years ago by ★ 2.4k
0
votes
0
replies
2.0k
views
Comment: Comment: National Institutes of Health tenure-track recruitment
updated 2.3 years ago by 43k • written 9.6 years ago by ★ 2.4k
1
vote
2
replies
4.9k
views
Answer: Answer: An idea to identify batch effects
updated 2.3 years ago by 43k • written 9.6 years ago by ★ 2.4k
8
votes
4
replies
1.9k
views
Forum: Please add tweet link to posts (update: you can now embed tweets)
meta biostars twitter
updated 13 months ago by 43k • written 9.8 years ago by ★ 2.4k
5
votes
3
replies
3.4k
views
how to get -nms for bedtools
bedtools
updated 2.3 years ago by 43k • written 9.7 years ago by ★ 2.4k
4
votes
1
reply
7.2k
views
Answer: A: Pathway Analysis Tool
9.7 years ago by Ann ★ 2.4k
0
votes
0
replies
2.7k
views
Comment: C: tophat2 reported the same alignment twice for the same read (paired end data)
9.8 years ago by Ann ★ 2.4k
2
votes
3
replies
2.7k
views
tophat2 reported the same alignment twice for the same read (paired end data)
paired-end RNA-Seq tophat tophat2 igb
updated 2.4 years ago by 43k • written 9.8 years ago by ★ 2.4k
1
vote
1
reply
2.0k
views
tools for writing edge case BAM Files for testing
RNA-Seq python bam
updated 2.4 years ago by 43k • written 9.8 years ago by ★ 2.4k
0
votes
1
reply
41k
views
Comment: Comment: How Do You Justify Your Rna-Seq Expression Threshold (Fpkm/Rpkm) ?
updated 2.4 years ago by 43k • written 9.8 years ago by ★ 2.4k
3
votes
3
replies
41k
views
Answer: Answer: How Do You Justify Your Rna-Seq Expression Threshold (Fpkm/Rpkm) ?
updated 2.4 years ago by 43k • written 9.8 years ago by ★ 2.4k
0
votes
0
replies
5.5k
views
Answer: A: Biostar on Google Summer of Code. Suggest features that you would like to see!
9.8 years ago by Ann ★ 2.4k
1
vote
0
replies
2.6k
views
Answer: Answer: Why number of reads in a sample that are assigned to gene i can be modeled by a
updated 2.4 years ago by 43k • written 9.8 years ago by ★ 2.4k
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