User: Shahzad

gravatar for Shahzad
Shahzad10
Reputation:
10
Status:
New User
Location:
Pakistan
Last seen:
3 months, 1 week ago
Joined:
5 years, 10 months ago
Email:
s****@live.com

Posts by Shahzad

<prev • 65 results • page 1 of 7 • next >
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Reference of Whole exome sequecing analysis
... Dear all I am new for WES analysis and want to ask which human reference genome should i download for Whole Exome analysis. Please share a direct link to the genome assembly and also the gtf/gff3 file if it should be used. It is very confusing with so many variants of human genome i.e masked, unmas ...
variant calling ngs wes mutation bwa written 3 months ago by Shahzad10 • updated 3 months ago by lakhujanivijay5.1k
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NCBI gene Dabase info extration
... Hi All I want to extract some information for about 2000 genes from NCBI gene database. i have GI and official gene symbols of these genes. https://imgur.com/A8ARi2U I need the gene ontology info in text form if possible. Is there any way to do it or any other database which can be used to collect t ...
ncbi gene databe gene ontology written 8 months ago by Shahzad10 • updated 8 months ago by vkkodali2.0k
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PCA for multiple transcriptome-assemblies
... Hi Can we perform Principal component analysis PCA for multiple transcriptome-assemblies to show the shared similarity between them? ...
assembly next-gen rna-seq R written 9 months ago by Shahzad10
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Comment: C: drmtools installation error
... Hi thank you. sorry for late reply. The executables were going in default directory as directed by the script had to edit the directory path from the script. ...
written 9 months ago by Shahzad10
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Comment: C: Extracting fasta sequences with identical header
... File "extractentr.py", line 17 print "This program requires the Biopython library" ^ SyntaxError: Missing parentheses in call to 'print'. Did you mean print("This program requires the Biopython library")? and after changing i ...
written 10 months ago by Shahzad10
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Comment: C: drmtools installation error
... ls build.make C.includecache cmake_clean.cmake DependInfo.cmake depend.internal depend.make execinput.c.o flags.make link.txt progress.mak these are files from one folder generated by after compilation. i even manally export the path still not found by the system. ...
written 10 months ago by Shahzad10
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Comment: C: drmtools installation error
... i want to use extract: A utility that is designed to extract and emit data from text files based on character or token position. In many instances it can replace tr, sed, or awk. execinput: A utility that reads from stdin and executes ...
written 10 months ago by Shahzad10
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Comment: C: drmtools installation error
... Hi the problem was solved but then the commands that should be available for use in the env was not present. the install ran successfully buntuNew:~/Downloads/drm_tools-1.1.28/build$ make Scanning dependencies of target binsplit [ 2%] Building C object CMakeFiles/binsplit.d ...
written 10 months ago by Shahzad10
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Comment: C: drmtools installation error
... Thank you. That solved the problem. Also thank you @lakhujanivijay i ll take care of the from now on. ...
written 10 months ago by Shahzad10
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drmtools installation error
... Dear All please help me to solve this installation error while installing a small util https://sourceforge.net/projects/drmtools/ Build instructions: Use cmake. Inspect the CMakeLists.txt and verify that it will install to the directory you want. Then do: mkdir build cd build cmake .. ma ...
make drmtools cmake written 10 months ago by Shahzad10 • updated 10 months ago by genomax85k

Latest awards to Shahzad

Epic Question 7 months ago, created a question with more than 10,000 views. For FastQC not making html output report.
Popular Question 9 months ago, created a question with more than 1,000 views. For How to make an annotation file for reference genome?
Popular Question 10 months ago, created a question with more than 1,000 views. For How to make an annotation file for reference genome?
Supporter 10 months ago, voted at least 25 times.
Popular Question 17 months ago, created a question with more than 1,000 views. For How to get counts of STAR output (sam/bam).
Popular Question 18 months ago, created a question with more than 1,000 views. For How to get counts of STAR output (sam/bam).
Great Question 21 months ago, created a question with more than 5,000 views. For How to get counts of STAR output (sam/bam).
Great Question 2.8 years ago, created a question with more than 5,000 views. For FastQC not making html output report.
Popular Question 2.8 years ago, created a question with more than 1,000 views. For How to get counts of STAR output (sam/bam).
Popular Question 2.8 years ago, created a question with more than 1,000 views. For How to make an annotation file for reference genome?
Popular Question 2.8 years ago, created a question with more than 1,000 views. For adding sequence in ncbi downloaded blast result txt file
Popular Question 2.8 years ago, created a question with more than 1,000 views. For NGS microRNA (smRNA) analysis
Popular Question 2.8 years ago, created a question with more than 1,000 views. For Identical structure in different domains.
Popular Question 2.8 years ago, created a question with more than 1,000 views. For HD image drawing for research/review paper
Popular Question 2.8 years ago, created a question with more than 1,000 views. For FastQC not making html output report.
Popular Question 2.8 years ago, created a question with more than 1,000 views. For miRNA target prediction tools
Popular Question 2.8 years ago, created a question with more than 1,000 views. For RNA-seq reads mapping on reference genome
Popular Question 3.4 years ago, created a question with more than 1,000 views. For How to get counts of STAR output (sam/bam).
Popular Question 3.5 years ago, created a question with more than 1,000 views. For How to get counts of STAR output (sam/bam).
Popular Question 3.7 years ago, created a question with more than 1,000 views. For FastQC not making html output report.
Popular Question 4.1 years ago, created a question with more than 1,000 views. For miRNA target prediction tools

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