User: Shahzad

gravatar for Shahzad
Shahzad10
Reputation:
10
Status:
New User
Location:
Pakistan
Last seen:
3 weeks, 6 days ago
Joined:
5 years, 2 months ago
Email:
s****@live.com

Posts by Shahzad

<prev • 63 results • page 1 of 7 • next >
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PCA for multiple transcriptome-assemblies
... Hi Can we perform Principal component analysis PCA for multiple transcriptome-assemblies to show the shared similarity between them? ...
assembly next-gen rna-seq R written 29 days ago by Shahzad10
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Comment: C: drmtools installation error
... Hi thank you. sorry for late reply. The executables were going in default directory as directed by the script had to edit the directory path from the script. ...
written 29 days ago by Shahzad10
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Comment: C: Extracting fasta sequences with identical header
... File "extractentr.py", line 17 print "This program requires the Biopython library" ^ SyntaxError: Missing parentheses in call to 'print'. Did you mean print("This program requires the Biopython library")? and after changing i ...
written 7 weeks ago by Shahzad10
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Comment: C: drmtools installation error
... ls build.make C.includecache cmake_clean.cmake DependInfo.cmake depend.internal depend.make execinput.c.o flags.make link.txt progress.mak these are files from one folder generated by after compilation. i even manally export the path still not found by the system. ...
written 7 weeks ago by Shahzad10
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Comment: C: drmtools installation error
... i want to use extract: A utility that is designed to extract and emit data from text files based on character or token position. In many instances it can replace tr, sed, or awk. execinput: A utility that reads from stdin and executes ...
written 7 weeks ago by Shahzad10
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Comment: C: drmtools installation error
... Hi the problem was solved but then the commands that should be available for use in the env was not present. the install ran successfully buntuNew:~/Downloads/drm_tools-1.1.28/build$ make Scanning dependencies of target binsplit [ 2%] Building C object CMakeFiles/binsplit.d ...
written 7 weeks ago by Shahzad10
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Comment: C: drmtools installation error
... Thank you. That solved the problem. Also thank you @lakhujanivijay i ll take care of the from now on. ...
written 7 weeks ago by Shahzad10
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drmtools installation error
... Dear All please help me to solve this installation error while installing a small util https://sourceforge.net/projects/drmtools/ Build instructions: Use cmake. Inspect the CMakeLists.txt and verify that it will install to the directory you want. Then do: mkdir build cd build cmake .. ma ...
make drmtools cmake written 7 weeks ago by Shahzad10 • updated 7 weeks ago by genomax73k
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which file from the Transdecoder.predict to be used for cd-hit input?
... Transdecoder.predict makes following files after completion 1. transdecoder.assembly.cds 2. transdecoder.assembly.pep 3. transdecoder.assembly.bed 4. transdecoder.assembly.gff3 I want to ask which of this file is to be used with cd-hit for clustering to remove redundant seqs from assembly. if ...
assembly sequencing rna-seq transdecoder cd-hit written 7 weeks ago by Shahzad10
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How to retain Trinity Transcriptome assembly headers after running Transdecoder on the assembly?
... I processed transcriptome.fasta with transdecoder which changed the header of the the fasta sequences in the output of transdecoder. how can i get the output file header matched to relevent entry in the input assembly. ...
assembly trinity rna-seq transdecoder written 8 weeks ago by Shahzad10

Latest awards to Shahzad

Popular Question 7 weeks ago, created a question with more than 1,000 views. For How to make an annotation file for reference genome?
Supporter 7 weeks ago, voted at least 25 times.
Popular Question 8 months ago, created a question with more than 1,000 views. For How to get counts of STAR output (sam/bam).
Popular Question 9 months ago, created a question with more than 1,000 views. For How to get counts of STAR output (sam/bam).
Great Question 13 months ago, created a question with more than 5,000 views. For How to get counts of STAR output (sam/bam).
Great Question 2.1 years ago, created a question with more than 5,000 views. For FastQC not making html output report.
Popular Question 2.1 years ago, created a question with more than 1,000 views. For How to get counts of STAR output (sam/bam).
Popular Question 2.1 years ago, created a question with more than 1,000 views. For How to make an annotation file for reference genome?
Popular Question 2.1 years ago, created a question with more than 1,000 views. For adding sequence in ncbi downloaded blast result txt file
Popular Question 2.1 years ago, created a question with more than 1,000 views. For NGS microRNA (smRNA) analysis
Popular Question 2.1 years ago, created a question with more than 1,000 views. For Identical structure in different domains.
Popular Question 2.1 years ago, created a question with more than 1,000 views. For HD image drawing for research/review paper
Popular Question 2.1 years ago, created a question with more than 1,000 views. For FastQC not making html output report.
Popular Question 2.1 years ago, created a question with more than 1,000 views. For miRNA target prediction tools
Popular Question 2.1 years ago, created a question with more than 1,000 views. For RNA-seq reads mapping on reference genome
Popular Question 2.7 years ago, created a question with more than 1,000 views. For How to get counts of STAR output (sam/bam).
Popular Question 2.8 years ago, created a question with more than 1,000 views. For How to get counts of STAR output (sam/bam).
Popular Question 3.0 years ago, created a question with more than 1,000 views. For FastQC not making html output report.
Popular Question 3.3 years ago, created a question with more than 1,000 views. For miRNA target prediction tools

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