User: Boboppie

gravatar for Boboppie
Boboppie530
Reputation:
530
Status:
New User
Location:
Cambridge, UK
Website:
http://modencode.org
Last seen:
5 years, 10 months ago
Joined:
8 years, 7 months ago
Email:
f***********@gmail.com

I'm currently a bioinformatics software developer for modENCODE project in Department of Genetics, University of Cambridge.

Posts by Boboppie

<prev • 35 results • page 2 of 4 • next >
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Comment: C: Regular Expression To Match Bed Format
... @Pierre, good point, cheers. ...
written 8.1 years ago by Boboppie530
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Regular Expression To Match Bed Format
... I see a TAB delimited parser, but I have to be restrict on the first three columns (chr, start, end), and since the rest of the columns are optional, they might not be available in the data at all. I came up with: [^\t]+\t\d+\t\d+\t?.|[^\t]+\t\d+\t\d+$ However I'm not really convinced by myself. ...
bed written 8.1 years ago by Boboppie530
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Comment: C: All Protein Coding Genes Of Drosophila Melanogaster
... @Mary really handy ...
written 8.2 years ago by Boboppie530
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Answer: A: Existing Tools For Generating Web Based Network Visualisation
... As @max said, web browsers limit the performance of network visualization, it has been already very slow even for a network smaller than 5k elements to be visualized in CytoWeb, see example here, just wondering what would be the bottleneck of a pure javascript based network displayer such as the exa ...
written 8.3 years ago by Boboppie530
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Comment: C: Existing Tools For Generating Web Based Network Visualisation
... It's actually based on Flash with a Javascript API. ...
written 8.3 years ago by Boboppie530
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Answer: A: Best Language For Introductory Programming Course From Within An Introduction Co
... Python undoubtedly is an ideal language for teaching basic programming. It's very elegant designed and easy reading. I personally think Perl is still The language for biological science due to large collection of libs/modules (Python is growing rapidly in such aspect). But Perl is also evolving, Per ...
written 8.3 years ago by Boboppie530
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Comment: C: Liftover Webservices/Api Available?
... Thanks Pierre, I also noticed this stand alone program, that could be a solution. But we would consider something lightweight first. ...
written 8.3 years ago by Boboppie530
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Liftover Webservices/Api Available?
... My question overlaps this one, but I have a different request. I'd like to integrate liftover functionality to my webapp instead of reinvent the wheel. Ideally, I can make use of some trustworthy webservices/API which to my knowledge are not available anywhere. Galaxy and UCSC have web-based servic ...
liftover written 8.3 years ago by Boboppie530 • updated 8.3 years ago by Pierre Lindenbaum123k
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Comment: C: How Was This Genomic Region Mapping Image Plotted?
... @pierre cool, thanx! ...
written 8.3 years ago by Boboppie530
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How Was This Genomic Region Mapping Image Plotted?
... It is originally from this paper. It looks to me was created by photoshop or some advanced image editor. Ideas? Are there other toolkits or libs available to create nice synteny map or region mapping image like this? ...
genome visualization written 8.3 years ago by Boboppie530 • updated 5.1 years ago by Biostar ♦♦ 20

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