User: asif.zubair

gravatar for asif.zubair
Reputation:
0
Status:
New User
Last seen:
1 year, 5 months ago
Joined:
6 years, 5 months ago
Email:
a**********@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by asif.zubair

<prev • 4 results • page 1 of 1 • next >
0
votes
0
answers
3.1k
views
0
answers
Comment: C: Recode to VCF with -a2-allele flag in PLINK
... yes, but since the `vcf` option is being used then the variant IDs should be assigned in the VCF file itself. ...
written 2.6 years ago by asif.zubair0
1
vote
1
answer
1.3k
views
1
answers
Answer: C: bedtools not working with gff from flybase
... Yes, it turns out there is a problem with flybase's gff file. It seems flybase people fixed that in a newer version. Thank you for pointing it out! ...
written 4.9 years ago by asif.zubair0
2
votes
1
answer
1.3k
views
1
answer
bedtools not working with gff from flybase
... Hi, I got a `gff` file from flybase that i am trying to use with `bedtools`. However, it is throwing an error: (0)> bedtools intersect -a my.vcf -b dmel-2L-r5.41.gff Error: Invalid record in file dmel-2L-r5.41.gff. Record is 2L FlyBase chromosome_band -204333 1326937 . ...
bedtools vcf gff flybase written 4.9 years ago by asif.zubair0
0
votes
0
answers
1.2k
views
0
answers
Using xdformat on fasta from REPBASE returns erorr.
... I am trying to use xdformat  to make xdf files from fasta files downloaded from REPBASE - http://www.girinst.org/server/archive/RepBase14.04 .  I concatenated all the references: cat RepBase14.04.fasta/*.ref RepBase14.04.fasta/appendix/*.ref > repbase_all.fasta and ran the following command u ...
transposons xdformat blast repbase written 5.0 years ago by asif.zubair0 • updated 2.5 years ago by Biostar ♦♦ 20

Latest awards to asif.zubair

Popular Question 2.6 years ago, created a question with more than 1,000 views. For bedtools not working with gff from flybase
Scholar 4.9 years ago, created an answer that has been accepted. For C: bedtools not working with gff from flybase
Supporter 4.9 years ago, voted at least 25 times.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1003 users visited in the last hour
_