User: Deena

gravatar for Deena
Deena260
Reputation:
260
Status:
Trusted
Location:
United Kingdom
Last seen:
2 weeks, 6 days ago
Joined:
9 years, 5 months ago
Email:
d***************@gmail.com

Associate Professor in Computational Biology and Bioinformatics

Posts by Deena

<prev • 6 results • page 1 of 1 • next >
6
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Is It Possible To Use And Cite Ncbi Geo Datasets That Don'T Have A Already-Published Citation?
... Hello, This question may seem rather straightforward, but I wanted to use several datasets from NCBI GEO Datasets and I have realized that many of them have been deposited (and updated) in previous years, but an attached citation with these datasets is still lacking. As such: 1- Can I use this da ...
ncbi geo written 6.8 years ago by Deena260 • updated 6.8 years ago by Ian5.7k
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In-Silico Phosphorylation Of A Protein Residue
... Dear Biostar members, I have an existing PDB structure for which I would like to generate a new, reliable, model/structure by phosphorylating the residues in-silico. Could you kindly give me advice on how one would proceed to do this? I would appreciate any advice on particular protein modelling ...
modeling protein written 7.0 years ago by Deena260 • updated 2.5 years ago by Biostar ♦♦ 20
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Answer: A: Determining Replicates For Deseq?
... I have also posted this in Seqanswers and received an answer, being followed-up on: http://seqanswers.com/forums/showthread.php?t=28558 Hopefully it may be useful to others. ...
written 7.4 years ago by Deena260
2
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Determining Replicates For Deseq?
... Hello, I am relatively new to RNA-Seq data analysis so I apologize in advance if this is a novice question. I have been reading several forums on the subject and I think I have the general idea, but I would be happy to get advice from the experts. I have RNA-Seq data for multiple samples of a speci ...
replicates gene expression deseq rna-seq written 7.4 years ago by Deena260
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How Do You Pick A Pdb Nmr Conformation For Multivariate Analysis?
... Hello, I was wondering regarding performing multivariate analysis on structures of proteins (ex: based on C-alpha coordinates) using a multivariate approach such as principal component analysis (PCA). For protein models which are derived from solution NMR, and for which multiple conformers are ...
pdb pca protein structure written 9.3 years ago by Deena260 • updated 9.3 years ago by Tiago0
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Rationale For Pca Analysis
... Hello, I would appreciate comments/advice on when to use Principal Component Analysis and what PCA data represents. My understanding of the algorithm is that a set of correlated variables are represented as uncorrelated variables, from which one can derive an understanding of variation in the dat ...
feature pca written 9.5 years ago by Deena260 • updated 9.5 years ago by Deena Gendoo0

Latest awards to Deena

Great Question 9 months ago, created a question with more than 5,000 views. For Rationale For Pca Analysis
Librarian 2.1 years ago, created a post with more than 10 bookmarks. For Rationale For Pca Analysis
Popular Question 6.0 years ago, created a question with more than 1,000 views. For Determining Replicates For Deseq?
Popular Question 6.0 years ago, created a question with more than 1,000 views. For Rationale For Pca Analysis
Popular Question 6.6 years ago, created a question with more than 1,000 views. For Rationale For Pca Analysis
Student 9.3 years ago, asked a question with at least 3 up-votes. For How Do You Pick A Pdb Nmr Conformation For Multivariate Analysis?
Appreciated 9.5 years ago, created a post with more than 5 votes. For Rationale For Pca Analysis
Good Question 9.5 years ago, asked a question that was upvoted at least 5 times. For Rationale For Pca Analysis
Popular Question 9.5 years ago, created a question with more than 1,000 views. For Rationale For Pca Analysis
Student 9.5 years ago, asked a question with at least 3 up-votes. For Rationale For Pca Analysis

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