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Comment: C: Same alignment but with different output on tophat2, any ideas?
9.7 years ago by tiago211287 ★ 1.5k
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Comment: Comment: Same alignment but with different output on tophat2, any ideas?
updated 2.5 years ago by 45k • written 9.7 years ago by ★ 1.5k
1
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7
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2.1k
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Same alignment but with different output on tophat2, any ideas?
sam samstat RNA-Seq alignment
updated 2.5 years ago by 45k • written 9.7 years ago by ★ 1.5k
0
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Comment: Comment: Why the file unmapped.bam, from tophat has all reads with mapq =/> 30?
updated 2.5 years ago by 45k • written 9.7 years ago by ★ 1.5k
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2
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Comment: Comment: Why the file unmapped.bam, from tophat has all reads with mapq =/> 30?
updated 2.5 years ago by 45k • written 9.7 years ago by ★ 1.5k
0
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1
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4.5k
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Comment: Comment: SSPACE file error
updated 2.5 years ago by 45k • written 9.7 years ago by ★ 1.5k
0
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0
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2.1k
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Comment: C: Same alignment but with different output on tophat2, any ideas?
9.7 years ago by tiago211287 ★ 1.5k
0
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1
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3.7k
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Comment: Comment: How can I download GTF files from Biomart?
updated 2.5 years ago by 45k • written 9.7 years ago by ★ 1.5k
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0
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3.8k
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Comment: Comment: Why the file unmapped.bam, from tophat has all reads with mapq =/> 30?
updated 2.5 years ago by 45k • written 9.7 years ago by ★ 1.5k
0
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1
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2.7k
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Comment: C: Can Tophat2 Align a Book?
9.7 years ago by tiago211287 ★ 1.5k
5
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9
replies
3.8k
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Why the file unmapped.bam, from tophat has all reads with mapq =/> 30?
samstat tophat mapq
updated 2.5 years ago by 45k • written 9.7 years ago by ★ 1.5k
0
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1
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3.8k
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Comment: Comment: Why the file unmapped.bam, from tophat has all reads with mapq =/> 30?
updated 2.5 years ago by 45k • written 9.7 years ago by ★ 1.5k
0
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0
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4.5k
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Comment: Comment: Tophat Error "segment-based junction search failed"
updated 2.5 years ago by 45k • written 9.7 years ago by ★ 1.5k
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1
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4.4k
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Answer: Answer: Error when trying to fix the contigs order in the reference and vcf for FastaAlt
updated 2.5 years ago by 45k • written 9.7 years ago by ★ 1.5k
2
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3
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4.4k
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Error when trying to fix the contigs order in the reference and vcf for FastaAlternateReferenceMaker
RNA-Seq GATK FastaAlternateReferenceMaker
updated 2.5 years ago by 45k • written 9.7 years ago by ★ 1.5k
0
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0
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6.6k
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Comment: Comment: Mouse strains and Reference genome choice
updated 2.5 years ago by 45k • written 9.7 years ago by ★ 1.5k
0
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0
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6.6k
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Comment: Comment: Mouse strains and Reference genome choice
updated 2.5 years ago by 45k • written 9.7 years ago by ★ 1.5k
0
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2
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6.6k
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Comment: Comment: Mouse strains and Reference genome choice
updated 2.5 years ago by 45k • written 9.7 years ago by ★ 1.5k
8
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6
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6.6k
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Mouse strains and Reference genome choice
reference-genome mouse-strains
updated 2.5 years ago by 45k • written 9.7 years ago by ★ 1.5k
0
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1
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2.5k
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Comment: Comment: Can some known person explain to me the class code of NONCODE database?
updated 2.5 years ago by 45k • written 9.8 years ago by ★ 1.5k
1
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3
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2.5k
views
Can some known person explain to me the class code of NONCODE database?
RNA-Seq noncode
updated 2.5 years ago by 45k • written 9.8 years ago by ★ 1.5k
0
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0
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2.7k
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Comment: Comment: Can Tophat2 Align a Book?
updated 2.3 years ago by 45k • written 9.9 years ago by ★ 1.5k
1
vote
1
reply
1.2k
views
Analyse stranded and non-stranded RNA-seq data together?
RNA-seq
updated 2.2 years ago by 45k • written 9.9 years ago by ★ 1.5k
0
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0
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2.8k
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Comment: C: How can I be sure that I've made a good GO analysis?
10.3 years ago by tiago211287 ★ 1.5k
1
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3
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2.8k
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How can I be sure that I've made a good GO analysis?
RNA-Seq Ensembl Gene Onthology
updated 3.1 years ago by 45k • written 10.3 years ago by ★ 1.5k
0
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0
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4.5k
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Comment: Comment: Help with 2 list in R, comparing gene ID to get refined information from both
updated 3.1 years ago by 45k • written 10.3 years ago by ★ 1.5k
2
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2
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1.8k
views
How Can I fusionate 2 tables in R? So I can Count data.
Ensembl rna-seq R
updated 3.1 years ago by 45k • written 10.3 years ago by ★ 1.5k
1
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0
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1.8k
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Answer: Answer: How Can I fusionate 2 tables in R? So I can Count data.
updated 3.1 years ago by 45k • written 10.3 years ago by ★ 1.5k
1
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1
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4.5k
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Comment: Comment: Help with 2 list in R, comparing gene ID to get refined information from both
updated 3.1 years ago by 45k • written 10.3 years ago by ★ 1.5k
0
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1
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4.5k
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Comment: Comment: Help with 2 list in R, comparing gene ID to get refined information from both
updated 3.1 years ago by 45k • written 10.3 years ago by ★ 1.5k
0
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1
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4.5k
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Comment: Comment: Help with 2 list in R, comparing gene ID to get refined information from both
updated 3.1 years ago by 45k • written 10.3 years ago by ★ 1.5k
2
votes
8
replies
4.5k
views
Help with 2 list in R, comparing gene ID to get refined information from both
Ensembl Gene-list RNA-Seq R
updated 3.1 years ago by 45k • written 10.3 years ago by ★ 1.5k
2
votes
2
replies
3.1k
views
Mapping My gene list within chromosome bands
sequencing RNA-Seq
updated 3.1 years ago by 45k • written 10.3 years ago by ★ 1.5k
2
votes
0
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3.1k
views
Answer: Answer: Mapping My gene list within chromosome bands
updated 3.1 years ago by 45k • written 10.3 years ago by ★ 1.5k
0
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0
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8.3k
views
Comment: Comment: Removing Outliers from volcano plot
updated 3.1 years ago by 45k • written 10.3 years ago by ★ 1.5k
0
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0
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2.8k
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Comment: C: ClueGO question about cluster visualization.
10.4 years ago by tiago211287 ★ 1.5k
0
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1
reply
2.8k
views
ClueGO question about cluster visualization.
Cytoscape Network Cluego
updated 3.1 years ago by 45k • written 10.4 years ago by ★ 1.5k
0
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0
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2.8k
views
Comment: Comment: BINGO plugin in cytoscape giving empty output
updated 3.1 years ago by 45k • written 10.4 years ago by ★ 1.5k
0
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0
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2.4k
views
Comment: C: Question about gene ontology annotation: When analysing DE genes do we look for
10.4 years ago by tiago211287 ★ 1.5k
2
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2
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2.4k
views
Question about gene ontology annotation: When analysing DE genes do we look for all DE or we separate over and under expression?
Gene Ontology Annotation
updated 10.4 years ago by ★ 2.9k • written 10.4 years ago by ★ 1.5k
1
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0
replies
6.3k
views
Answer: Answer: How the best way to verify the up and down regulated genes in a list of DE genes
updated 3.1 years ago by 45k • written 10.4 years ago by ★ 1.5k
13
votes
9
replies
6.3k
views
How the best way to verify the up and down regulated genes in a list of DE genes, generated from DEseq?
RNA-Seq R DEseq
updated 3.1 years ago by 45k • written 10.4 years ago by ★ 1.5k
0
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1
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6.3k
views
Comment: Comment: How the best way to verify the up and down regulated genes in a list of DE genes
updated 3.1 years ago by 45k • written 10.4 years ago by ★ 1.5k
0
votes
0
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6.3k
views
Comment: C: How the best way to verify the up and down regulated genes in a list of DE genes
10.4 years ago by tiago211287 ★ 1.5k
0
votes
1
reply
6.3k
views
Comment: Comment: How the best way to verify the up and down regulated genes in a list of DE genes
updated 3.1 years ago by 45k • written 10.4 years ago by ★ 1.5k
11
votes
22
replies
12k
views
Error at the end of HT-seq Analysis and output.txt with 0 bytes in size
Empty Count HTseq Error
updated 4.1 years ago by 45k • written 10.6 years ago by ★ 1.5k
0
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0
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2.7k
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Comment: C: Conclusions from Volcano plot
10.6 years ago by tiago211287 ★ 1.5k
0
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0
replies
2.7k
views
Comment: C: Conclusions from Volcano plot
10.6 years ago by tiago211287 ★ 1.5k
10
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5
replies
2.7k
views
Conclusions from Volcano plot
volcano plot
updated 3.3 years ago by 45k • written 10.6 years ago by ★ 1.5k
0
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0
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13k
views
Comment: Comment: What exactly means the Dispersion Plot DESeq2?
updated 3.3 years ago by 45k • written 10.6 years ago by ★ 1.5k
215 results • Page 4 of 5
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