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Posts by ak221193
... Hi, I have multiple VCF files that are a result of variant calling on multiple members of a family. I was wondering how I can use these variant calling files along with a pedigree file for family based association using PLINK. How can I convert the VCFs into a suitable input file for PLINK. Tha ...
... Is there a way to generate a pileup for indels only using the samtools mpileup command? The -I flag can be used to skip indel calling but there is no option to call indels only. Thanks. ...
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