User: ak221193

gravatar for ak221193
ak22119310
Reputation:
10
Status:
New User
Location:
Los Angeles, United States
Twitter:
akshaanK
Last seen:
6 years, 3 months ago
Joined:
6 years, 5 months ago
Email:
a***************@gmail.com

Posts by ak221193

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Multiple vcf files with plink
... Hi, I have multiple VCF files that are a result of variant calling on multiple members of a family. I was wondering how I can use these variant calling files along with a pedigree file for family based association using PLINK. How can I convert the VCFs into a suitable input file for PLINK.   Tha ...
vcf snps family plink written 6.4 years ago by ak22119310 • updated 6.4 years ago by Jorge Amigo12k
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Generate pileup for indels only using SAMtools mpileup
... Is there a way to generate a pileup for indels only using the samtools mpileup command? The -I flag can be used to skip indel calling but there is no option to call indels only. Thanks. ...
indel samtools snp mpileup written 6.5 years ago by ak22119310 • updated 6.5 years ago by dariober11k

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