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Comment: Comment: featureCounts output
9 months ago by QX ▴ 70
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0
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1.1k
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Comment: Comment: featureCounts output
9 months ago by QX ▴ 70
0
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1
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979
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Comment: Comment: input for gatk VariantAnnotator --dbsnp
9 months ago by QX ▴ 70
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0
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979
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Comment: Comment: input for gatk VariantAnnotator --dbsnp
9 months ago by QX ▴ 70
0
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1
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979
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Comment: Comment: input for gatk VariantAnnotator --dbsnp
9 months ago by QX ▴ 70
2
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6
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979
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input for gatk VariantAnnotator --dbsnp
VariantAnnotator gatk
updated 9 months ago by 150k • written 9 months ago by ▴ 70
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0
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1.2k
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Comment: Comment: best way to submit hpc job using snakemake
9 months ago by QX ▴ 70
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1
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1.2k
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Comment: Comment: best way to submit hpc job using snakemake
9 months ago by QX ▴ 70
5
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5
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1.2k
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best way to submit hpc job using snakemake
snakemake
9 months ago by QX ▴ 70
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1
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556
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Comment: Comment: snakemake config file with path
9 months ago by QX ▴ 70
1
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3
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556
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snakemake config file with path
snakemake
updated 9 months ago by ▴ 140 • written 9 months ago by ▴ 70
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2
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482
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how to colorize snakemake editing text
snakemake
updated 9 months ago by 55k • written 9 months ago by ▴ 70
1
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1
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623
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Comment: Comment: Any recommended way to view scRNAseq results in an interactive format?
9 months ago by QX ▴ 70
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1.3k
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Comment: Comment: Calling variants/SNP for single-cell RNA-seq data
9 months ago by QX ▴ 70
3
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5
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1.3k
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Calling variants/SNP for single-cell RNA-seq data
SNP scRNAseq
updated 7 months ago by ▴ 760 • written 9 months ago by ▴ 70
2
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1
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431
views
Split the fastqc file base on barcode
fastq
updated 10 months ago by 150k • written 10 months ago by ▴ 70
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0
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738
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Comment: Comment: bash for merging bam files by samtools
10 months ago by QX ▴ 70
0
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0
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769
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Comment: Comment: scRNA integration problem with cluster not being separated
10 months ago by QX ▴ 70
2
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3
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738
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bash for merging bam files by samtools
samtools
updated 10 months ago by 150k • written 10 months ago by ▴ 70
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0
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933
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Comment: Comment: chIP-seq vs ATACseq analysis
10 months ago by QX ▴ 70
5
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3
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933
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chIP-seq vs ATACseq analysis
ATACseq
10 months ago by QX ▴ 70
0
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1
reply
899
views
invalid class “Assay” object issue from Seurat
seurat
updated 10 months ago by ★ 3.1k • written 10 months ago by ▴ 70
0
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1
reply
769
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Comment: Comment: scRNA integration problem with cluster not being separated
10 months ago by QX ▴ 70
8
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3
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986
views
conda-like env for R
R conda
updated 10 months ago by ★ 2.9k • written 10 months ago by ▴ 70
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0
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6.4k
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Comment: Comment: Different bigwig file sizes between BedgraphToBigwig and bamCoverage
10 months ago by QX ▴ 70
0
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1
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6.4k
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Comment: Comment: Different bigwig file sizes between BedgraphToBigwig and bamCoverage
10 months ago by QX ▴ 70
2
votes
1
reply
451
views
Trimming from 151bp to 65bp
sequencing data
updated 10 months ago by 150k • written 10 months ago by ▴ 70
0
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0
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1.3k
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Comment: Comment: Asking for parallel jobs setting on HPC when analyzing sequencing data
10 months ago by QX ▴ 70
0
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1
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1.3k
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Comment: Comment: Asking for parallel jobs setting on HPC when analyzing sequencing data
10 months ago by QX ▴ 70
0
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0
replies
1.3k
views
Comment: Comment: Asking for parallel jobs setting on HPC when analyzing sequencing data
10 months ago by QX ▴ 70
0
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2
replies
1.3k
views
Comment: Comment: Asking for parallel jobs setting on HPC when analyzing sequencing data
10 months ago by QX ▴ 70
5
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11
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1.3k
views
6 follow
Asking for parallel jobs setting on HPC when analyzing sequencing data
HPC parallel
updated 10 months ago by 4.7k • written 10 months ago by ▴ 70
0
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1
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7.6k
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Comment: Comment: Difference between proper paired reads and mapped and paired reads
10 months ago by QX ▴ 70
0
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0
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825
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Comment: Comment: cannot conda install macs3 on linux
10 months ago by QX ▴ 70
4
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2
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825
views
cannot conda install macs3 on linux
atac macs3
10 months ago by QX ▴ 70
0
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1
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1.0k
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Comment: Comment: How to scrape BioMart data from https://sorfs.ugent.be/ website
11 months ago by QX ▴ 70
3
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5
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1.0k
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How to scrape BioMart data from https://sorfs.ugent.be/ website
BioMart
updated 11 months ago by 166k • written 11 months ago by ▴ 70
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0
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1.0k
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Comment: Comment: How to scrape BioMart data from https://sorfs.ugent.be/ website
11 months ago by QX ▴ 70
0
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0
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764
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Comment: Comment: Unexpected read length from NGS
11 months ago by QX ▴ 70
3
votes
3
replies
764
views
Unexpected read length from NGS
NGS Illumina
11 months ago by QX ▴ 70
0
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0
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859
views
Comment: Comment: Why gatk VariantAnnotator required bam and coverage files
12 months ago by QX ▴ 70
0
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1
reply
859
views
Comment: Comment: Why gatk VariantAnnotator required bam and coverage files
12 months ago by QX ▴ 70
3
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4
replies
859
views
Why gatk VariantAnnotator required bam and coverage files
gatk VariantAnnotator
12 months ago by QX ▴ 70
0
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0
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261
views
Add geno header to VariantAnnotation objects
nichenet scRNA-seq
12 months ago by QX ▴ 70
0
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0
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536
views
Comment: Comment: Cell communacations analysis. I only have the proteome of one type of cell
12 months ago by QX ▴ 70
0
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0
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245
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NicheNet cell-cell communication analysis outcome
nichenet scRNA-seq
12 months ago by QX ▴ 70
0
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0
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941
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Comment: Comment: Annotate genes from gtf file to vcf file
13 months ago by QX ▴ 70
2
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3
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941
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Annotate genes from gtf file to vcf file
gtf genomics vcf
13 months ago by QX ▴ 70
0
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0
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2.2k
views
Comment: Comment: Adding gene symbol to GRanges for calculation purposes
13 months ago by QX ▴ 70
0
votes
1
reply
416
views
Adding gene to GRange objects with single base
GRanges genomics
updated 13 months ago by 87k • written 13 months ago by ▴ 70
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