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2
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1
reply
304
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Split the fastqc file base on barcode
fastq
updated 3 months ago by 146k • written 3 months ago by ▴ 60
0
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0
replies
404
views
Comment: Comment: bash for merging bam files by samtools
4 months ago by QX ▴ 60
0
votes
0
replies
447
views
Comment: Comment: scRNA integration problem with cluster not being separated
4 months ago by QX ▴ 60
2
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3
replies
404
views
bash for merging bam files by samtools
samtools
updated 4 months ago by 146k • written 4 months ago by ▴ 60
0
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0
replies
532
views
Comment: Comment: chIP-seq vs ATACseq analysis
4 months ago by QX ▴ 60
5
votes
3
replies
532
views
chIP-seq vs ATACseq analysis
ATACseq
4 months ago by QX ▴ 60
0
votes
1
reply
374
views
invalid class “Assay” object issue from Seurat
seurat
updated 4 months ago by ★ 3.0k • written 4 months ago by ▴ 60
0
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1
reply
447
views
Comment: Comment: scRNA integration problem with cluster not being separated
4 months ago by QX ▴ 60
8
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3
replies
477
views
conda-like env for R
R conda
updated 4 months ago by ★ 2.5k • written 4 months ago by ▴ 60
0
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0
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5.5k
views
Comment: Comment: Different bigwig file sizes between BedgraphToBigwig and bamCoverage
4 months ago by QX ▴ 60
0
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1
reply
5.5k
views
Comment: Comment: Different bigwig file sizes between BedgraphToBigwig and bamCoverage
4 months ago by QX ▴ 60
2
votes
1
reply
271
views
Trimming from 151bp to 65bp
sequencing data
updated 4 months ago by 146k • written 4 months ago by ▴ 60
0
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0
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665
views
Comment: Comment: Asking for parallel jobs setting on HPC when analyzing sequencing data
4 months ago by QX ▴ 60
0
votes
1
reply
665
views
Comment: Comment: Asking for parallel jobs setting on HPC when analyzing sequencing data
4 months ago by QX ▴ 60
0
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0
replies
665
views
Comment: Comment: Asking for parallel jobs setting on HPC when analyzing sequencing data
4 months ago by QX ▴ 60
0
votes
2
replies
665
views
Comment: Comment: Asking for parallel jobs setting on HPC when analyzing sequencing data
4 months ago by QX ▴ 60
5
votes
11
replies
665
views
6 follow
Asking for parallel jobs setting on HPC when analyzing sequencing data
HPC parallel
updated 4 months ago by 4.7k • written 4 months ago by ▴ 60
0
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1
reply
7.1k
views
Comment: Comment: Difference between proper paired reads and mapped and paired reads
4 months ago by QX ▴ 60
0
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0
replies
415
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Comment: Comment: cannot conda install macs3 on linux
4 months ago by QX ▴ 60
4
votes
2
replies
415
views
cannot conda install macs3 on linux
atac macs3
4 months ago by QX ▴ 60
0
votes
1
reply
658
views
Comment: Comment: How to scrape BioMart data from https://sorfs.ugent.be/ website
4 months ago by QX ▴ 60
3
votes
5
replies
658
views
How to scrape BioMart data from https://sorfs.ugent.be/ website
BioMart
updated 4 months ago by 164k • written 4 months ago by ▴ 60
0
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0
replies
658
views
Comment: Comment: How to scrape BioMart data from https://sorfs.ugent.be/ website
4 months ago by QX ▴ 60
0
votes
0
replies
444
views
Comment: Comment: Unexpected read length from NGS
4 months ago by QX ▴ 60
3
votes
3
replies
444
views
Unexpected read length from NGS
NGS Illumina
4 months ago by QX ▴ 60
0
votes
0
replies
629
views
Comment: Comment: Why gatk VariantAnnotator required bam and coverage files
5 months ago by QX ▴ 60
0
votes
1
reply
629
views
Comment: Comment: Why gatk VariantAnnotator required bam and coverage files
5 months ago by QX ▴ 60
3
votes
4
replies
629
views
Why gatk VariantAnnotator required bam and coverage files
gatk VariantAnnotator
5 months ago by QX ▴ 60
0
votes
0
replies
185
views
Add geno header to VariantAnnotation objects
nichenet scRNA-seq
5 months ago by QX ▴ 60
0
votes
0
replies
384
views
Comment: Comment: Cell communacations analysis. I only have the proteome of one type of cell
6 months ago by QX ▴ 60
0
votes
0
replies
167
views
NicheNet cell-cell communication analysis outcome
nichenet scRNA-seq
6 months ago by QX ▴ 60
0
votes
0
replies
566
views
Comment: Comment: Annotate genes from gtf file to vcf file
6 months ago by QX ▴ 60
2
votes
3
replies
566
views
Annotate genes from gtf file to vcf file
gtf genomics vcf
6 months ago by QX ▴ 60
0
votes
0
replies
2.0k
views
Comment: Comment: Adding gene symbol to GRanges for calculation purposes
6 months ago by QX ▴ 60
0
votes
1
reply
295
views
Adding gene to GRange objects with single base
GRanges genomics
updated 6 months ago by 85k • written 6 months ago by ▴ 60
0
votes
1
reply
276
views
SNP and Genes position matching dataframes in R
R dataframe
updated 7 months ago by ★ 2.5k • written 7 months ago by ▴ 60
2
votes
1
reply
265
views
Computing the neighborhood graph in single cell pipeline
single-cell knn
updated 7 months ago by 85k • written 7 months ago by ▴ 60
0
votes
2
replies
425
views
Visualize and access gvcf/vcf files
genomics vcf
updated 3 months ago by ▴ 10 • written 7 months ago by ▴ 60
0
votes
0
replies
820
views
Comment: Comment: batch effect correction in 10x genomics single cell sequencing
8 months ago by QX ▴ 60
0
votes
3
replies
820
views
Comment: Comment: batch effect correction in 10x genomics single cell sequencing
8 months ago by QX ▴ 60
0
votes
0
replies
927
views
Comment: Comment: problem with importing mtx file in scanpy
9 months ago by QX ▴ 60
0
votes
2
replies
927
views
problem with importing mtx file in scanpy
scanpy scRNAseq
9 months ago by QX ▴ 60
0
votes
0
replies
1.1k
views
Answer: Answer: How can I call somatic CNV in tumor samples with no normal samples?
10 months ago by QX ▴ 60
1
vote
1
reply
455
views
Variant calling using HaplotypeCaller does not show #FILTER information
Variant-calling GATK HaplotypeCaller WGS
updated 10 months ago by 44k • written 10 months ago by ▴ 60
0
votes
0
replies
542
views
Comment: Comment: Execute R command on specific termimal
10 months ago by QX ▴ 60
5
votes
2
replies
542
views
Execute R command on specific termimal
R
updated 10 months ago by 44k • written 10 months ago by ▴ 60
0
votes
0
replies
1.1k
views
Comment: Comment: Downstream analysis with DEseq2 normalization
10 months ago by QX ▴ 60
0
votes
1
reply
1.1k
views
Comment: Comment: Downstream analysis with DEseq2 normalization
10 months ago by QX ▴ 60
0
votes
0
replies
602
views
Comment: Comment: Normalization function in DEseq2
10 months ago by QX ▴ 60
3
votes
4
replies
1.1k
views
Downstream analysis with DEseq2 normalization
DEseq2 integration
10 months ago by QX ▴ 60
107 results • Page 2 of 3
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