User: dahliashvets

gravatar for dahliashvets
dahliashvets10
Reputation:
10
Status:
New User
Location:
United States
Last seen:
3 years, 5 months ago
Joined:
4 years, 6 months ago
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d***********@gmail.com

Posts by dahliashvets

<prev • 18 results • page 1 of 2 • next >
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Comment: C: fastqToCA command in Celera Assembler
... Yes I am using a mac, I have gotten it to run on a mac at work but am trying to now run it at home on my laptop. Any ideas what the error could mean? Thanks! ...
written 3.5 years ago by dahliashvets10
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fastqToCA command in Celera Assembler
... I am trying to create the .frg file in order to run the runCA command in the Celera Assembler. I am having no luck though. This is the command that I am trying to run: ~/Desktop/PACBIO_Research/wgs-8.3rc2/Darwin-amd64/bin/fastqToCA -libraryname TEST -reads shortFile.fastq > test.frg And this is ...
de novo fastq celera assembly fasqtoca pacbio written 3.5 years ago by dahliashvets10
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Comment: C: Install HGAP for de novo PacBio Assembly
... Thank you for this information! Much appreciated! ...
written 3.5 years ago by dahliashvets10
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Comment: C: Install HGAP for de novo PacBio Assembly
... Thank you for your help and advice, much appreciated! ...
written 3.5 years ago by dahliashvets10
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Comment: C: Install HGAP for de novo PacBio Assembly
... Please don't point me to articles that don't actually answer my question. It states here in the manual that you cannot install Smart Analysis on a Mac and it can require up to 10TB of space, and not to install it on a single node machine: https://github.com/PacificBiosciences/SMRT-Analysis/wiki/SMR ...
written 3.5 years ago by dahliashvets10
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Install HGAP for de novo PacBio Assembly
... Hi, I am about to receive pac bio data and need to perform de novo assembly on the data. I am looking into using HGAP from the Smrt Analysis package. However, this package is absolutely huge according to what I have found online (1TB?). I only want to use HGAP. Is there anyway to JUST download HGA ...
de novo assembly hgap pacbio smrt analysis written 3.5 years ago by dahliashvets10 • updated 3.5 years ago by rhall160
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Comment: C: ANNOVAR ability to report reference and mutant codon
... Thanks so much for the tip! ...
written 3.8 years ago by dahliashvets10
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Comment: C: ANNOVAR ability to report reference and mutant codon
... Okay sounds good, thank you so much for looking into it! I just wanted to know if there did exist a way to do this in Annovar before I looked at other options.  Thanks again!!! ...
written 3.8 years ago by dahliashvets10
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Comment: C: ANNOVAR ability to report reference and mutant codon
... This is not my question, I already have this data, that is simply the amino acid change. I am speaking about the actual codon change. For example if it changes from the R to Q amino acid, I have heard that ANNOVAR can return the specific codon for R and then the specific codon for Q. This is what I ...
written 3.8 years ago by dahliashvets10
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Comment: C: ANNOVAR ability to report reference and mutant codon
... Are you able to tell me the actual command that accomplishes this? ...
written 3.8 years ago by dahliashvets10

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