User: cif077

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cif0770
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Answer: A: Sorting .bam file by tag
... Split by BX tag samtools view input.bam |\ awk -F "\t" 'match($0, /BX:Z:[ACGT]{16}-1/) {if (RSTART>0){OUTPUT=substr($0,RSTART+5,18); print $0 >> OUTPUT".sam"}}' Get original header samtools view -H input.bam > header.sam Create new bams for f in BX*.sam do ...
written 16 months ago by cif0770

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