User: Jonathanjacobs

gravatar for Jonathanjacobs
Reputation:
250
Status:
Trusted
Location:
Rockville, MD
Website:
http://microbe.land/
Twitter:
bioinformer
Scholar ID:
Google Scholar Page
Last seen:
4 months, 1 week ago
Joined:
9 years, 7 months ago
Email:
j**************@gmail.com

I am currently Director of Global Product Development for Qiagen’s genomic and bioinformatics analysis portfolio. You can also catch up with me on Twitter (@bioinformer).  My professional interests include genomics-led research & discovery - especially in the microbial genomics arena, development of human and animal disease diagnostics, and mobilizing genomics systems for use in the field and at the point of care. 

Posts by Jonathanjacobs

<prev • 38 results • page 2 of 4 • next >
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Answer: A: Export error WITH AGP?
... I know this is 2+ years old - but 1/ this may have been a bug at the time if you were trying to directly export a de novo assembly to FASTA. The work around was to first call consensus contigs from the assembly graph, and then export that. 2/ in the latest version (GxWB12 as of this writing) you ...
written 11 months ago by Jonathanjacobs250
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Answer: A: How do you interpret the results from GSEA analysis in CLC Genomics workbench?
... There are a number of ways to use GSEA analysis in CLC Genomics Workbench and Server - for RNAseq, miRNAseq, microarray analysis, and functional metagenomics profiling. In general, the CLC platform allows for Gene Ontology files to either be imported directly or directly downloaded (from GOC) and th ...
written 11 months ago by Jonathanjacobs250
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Comment: C: .clc to fastq
... Hi - just want to clarify on this point about not being able to recreate the data. IF the data was imported into CLC and the option to remove sequence read names, header info, etc was selected at the time of import - then yes the exact FASTQ would not be able to be recreated. However, you can alw ...
written 11 months ago by Jonathanjacobs250
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Answer: A: CLC Bio Variant detection with a Polyploid
... 2 is the correct answer. ;) ...
written 11 months ago by Jonathanjacobs250
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Answer: A: Results are now available for the precisionFDA CDRH Biothreat Challenge!
... I was happy we could participate and that we “placed”. I only wish I had known ahead of time we could have submitted more than one answer to the challenge. 😉😊 ...
written 19 months ago by Jonathanjacobs250
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Answer: A: Where can I find publicly available metagenomics contig datsets?
... I believe ENA and SRA have draft assemblies of MAGs - metagenomic assembled genomes - which is what you are looking for. I’m pretty sure all the MAGs (7000+) from the recent landmark paper from Parks et.al 2017 were deposited into Genbank under a single bioproject along with their predicted taxonomy ...
written 19 months ago by Jonathanjacobs250
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Comment: C: 97 Different Ways to do Metagenomics Classification...
... Thanks for the clarification. Also - here’s a direct link to the Zotero repo I have with the citations https://www.zotero.org/groups/2255187/microbial_genomics_references/items? (which i believe should include links to the articles and ability to download as bibtex, etc) ...
written 20 months ago by Jonathanjacobs250
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Blog: 97 Different Ways to do Metagenomics Classification...
... Hey all - I’ve notice a lot of people asking “how do i do X” wrt metagenomics or microbiome profiling. Or similarly- “Whats the best database / method / approach / etc?” for metagenomics. The reality is that it depends... on your specific research question, and on the underlying database you want / ...
microbiome metagenomics blog microbial genomics written 20 months ago by Jonathanjacobs250
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Job: Postdoctoral Research Associate, Bioinformatics & Microbial Genomics, MRIGlobal, Gaithersburg, MD, USA
... **SHORT LINK: https://goo.gl/NgnDjm** We currently have an opening for a Postdoctoral Research Associate in Bioinformatics which is available immediately and located in **Gaithersburg, MD.** The successful candidate will join a team of researchers at MRIGlobal actively conducting genomics-based res ...
bioinformatics virology job genomics microbiology written 2.9 years ago by Jonathanjacobs250 • updated 2.9 years ago by genomax90k
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Job: Associate Scientist: Microbial Genomics & Bioinformatics (US citizenship required), Rockville, MD, USA
... **Associate Scientist: Microbial Genomics & Bioinformatics** **CLICK HERE TO APPLY: https://goo.gl/Ozl3XC** Founded in 1944, MRIGlobal is an independent, not-for-profit organization that performs contract research and other services for clients in business, industry and government. We current ...
bioinformatics job microbial genomics biosurveillance written 4.4 years ago by Jonathanjacobs250 • updated 4.4 years ago by Istvan Albert ♦♦ 85k

Latest awards to Jonathanjacobs

Scholar 19 months ago, created an answer that has been accepted. For A: Where can I find publicly available metagenomics contig datsets?
Supporter 2.0 years ago, voted at least 25 times.
Commentator 2.0 years ago, created a comment with at least 3 up-votes. For C: What Are These Rp11 'Genes' In The Genome?
Teacher 6.8 years ago, created an answer with at least 3 up-votes. For A: Do You Feel Good Or Bad About Putting Your Photo At Biostar?
Autobiographer 6.8 years ago, has more than 80 characters in the information field of the user's profile.

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