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Comment: Comment: samtools convert SAM to BAM error code
2.6 years ago by Antonio R. Franco ★ 5.2k
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0
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1.4k
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Answer: Answer: BLAST Database error: No alias or index file found for protein database [/mnt/re
3.0 years ago by Antonio R. Franco ★ 5.2k
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0
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3.0k
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Comment: Comment: Get UniProt GO terms in R
3.0 years ago by Antonio R. Franco ★ 5.2k
2
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1
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3.0k
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Answer: Answer: Get UniProt GO terms in R
3.0 years ago by Antonio R. Franco ★ 5.2k
5
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0
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11k
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Comment: Comment: Differential gene expression analysis in Python
3.1 years ago by Antonio R. Franco ★ 5.2k
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0
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2.2k
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Comment: Comment: what does "total read count" means in fastqc file. how does it helpful for anal
3.1 years ago by Antonio R. Franco ★ 5.2k
1
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1
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1.5k
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Answer: Answer: deseq2.r command not found
3.1 years ago by Antonio R. Franco ★ 5.2k
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1
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2.2k
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Answer: Answer: what does "total read count" means in fastqc file. how does it helpful for anal
3.1 years ago by Antonio R. Franco ★ 5.2k
0
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0
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582
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Forum: Loss of Gene Information: Discrepancies between RNA Sequencing, cDNA Microarray, and qRT-PCR
RNA-Seq microarray qRT-PCR
3.3 years ago by Antonio R. Franco ★ 5.2k
3
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0
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1.0k
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Answer: Answer: IGV sequence name error .sam file
3.4 years ago by Antonio R. Franco ★ 5.2k
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1
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3.0k
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Answer: Answer: Problem with Deseq2
3.5 years ago by Antonio R. Franco ★ 5.2k
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1
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5.4k
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Comment: Comment: how to use the samtools filtering expression ?
3.6 years ago by Antonio R. Franco ★ 5.2k
2
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0
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1.7k
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Answer: Answer: fastp results, per base content
3.6 years ago by Antonio R. Franco ★ 5.2k
1
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0
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887
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Answer: A: supernova 10X assembler
3.8 years ago by Antonio R. Franco ★ 5.2k
0
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0
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832
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Comment: C: ?Design of DE analysis when one sample has no repeat
3.8 years ago by Antonio R. Franco ★ 5.2k
1
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0
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1.8k
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Comment: C: what should be view inside of SAM file?
3.8 years ago by Antonio R. Franco ★ 5.2k
4
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1
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1.8k
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Answer: A: what should be view inside of SAM file?
3.8 years ago by Antonio R. Franco ★ 5.2k
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0
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1.6k
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Answer: A: remove mitochondrial reads using Bowtie2
3.9 years ago by Antonio R. Franco ★ 5.2k
1
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0
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866
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Answer: A: What are the reasons to find so few Differentially expressed genes (DEGs)?
3.9 years ago by Antonio R. Franco ★ 5.2k
2
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1
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1.2k
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Help in interpreting an haploid assembled genome analyzed through BUSCO
BUSCO assembling
updated 3.9 years ago by 15k • written 3.9 years ago by ★ 5.2k
0
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0
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825
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Answer: A: What is the difference between Structural variants and Structural Variation
3.9 years ago by Antonio R. Franco ★ 5.2k
0
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0
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895
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Comment: C: Determination the KO numbers for the genes
3.9 years ago by Antonio R. Franco ★ 5.2k
0
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1
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895
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Answer: A: Determination the KO numbers for the genes
3.9 years ago by Antonio R. Franco ★ 5.2k
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0
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3.0k
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Comment: C: Next generation sequencing methodology
3.9 years ago by Antonio R. Franco ★ 5.2k
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0
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29k
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Comment: C: How To Separate Illumina Based Strand Specific Rna-Seq Alignments By Strand
3.9 years ago by Antonio R. Franco ★ 5.2k
0
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1
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1.3k
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Comment: C: Detecting Novel Spliceforms from RNAseq data- Will STAR>RSEM work or do I need t
4.0 years ago by Antonio R. Franco ★ 5.2k
0
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0
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1.3k
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Answer: A: Detecting Novel Spliceforms from RNAseq data- Will STAR>RSEM work or do I need t
4.0 years ago by Antonio R. Franco ★ 5.2k
0
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0
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2.2k
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Answer: A: qPCR to validate gene FPKM is 0 in RNA-Seq
4.1 years ago by Antonio R. Franco ★ 5.2k
0
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0
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7.5k
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Answer: A: RNA-seq experiment validation by qPCR
4.1 years ago by Antonio R. Franco ★ 5.2k
0
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0
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6.1k
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Answer: A: Validation of RNASeq Data - How to validate RNASeq DEGs using qPCR
4.1 years ago by Antonio R. Franco ★ 5.2k
0
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0
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2.0k
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Comment: C: Question: How to create a snakefile(snakemake) to align paired-end reads with bo
4.1 years ago by Antonio R. Franco ★ 5.2k
0
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0
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693
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Epigenome characterization with PacBio. Any experience ?
PacBio epigenome methylation
4.2 years ago by Antonio R. Franco ★ 5.2k
0
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0
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3.5k
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Comment: C: Identifying CpG islands given a vcf variant file
4.2 years ago by Antonio R. Franco ★ 5.2k
1
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0
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1.1k
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Answer: A: pathway analysis in plants
4.3 years ago by Antonio R. Franco ★ 5.2k
0
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1
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1.7k
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Comment: C: ChIP-seq analysis guidance for a beginner
4.4 years ago by Antonio R. Franco ★ 5.2k
0
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0
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953
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Answer: A: GO enrichment analysis on my own gene list
4.4 years ago by Antonio R. Franco ★ 5.2k
0
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0
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1.7k
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Comment: C: bowtie2 version-2.1.0 to 2.2.9 installation in ubuntu
4.5 years ago by Antonio R. Franco ★ 5.2k
5
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3
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1.7k
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Meaning of columns in TSV Kallisto mapped file
kallisto differential expression tpm
4.5 years ago by Antonio R. Franco ★ 5.2k
0
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1
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1.7k
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Answer: A: Meaning of columns in TSV Kallisto mapped file
4.5 years ago by Antonio R. Franco ★ 5.2k
3
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1
reply
66k
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Answer: A: What Are The Most Common Stupid Mistakes In Bioinformatics?
updated 4.5 years ago by 44k • written 9.2 years ago by ★ 5.2k
0
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0
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34k
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Comment: C: Can the code of a R package be changed? How?
4.6 years ago by Antonio R. Franco ★ 5.2k
2
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0
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3.1k
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Answer: A: When should one be concerned about the CG content in RNA-seq experiment?
4.6 years ago by Antonio R. Franco ★ 5.2k
0
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0
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1.3k
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Comment: C: DEG analysis when not replicates are available
4.6 years ago by Antonio R. Franco ★ 5.2k
1
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1
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1.3k
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Answer: A: DEG analysis when not replicates are available
4.6 years ago by Antonio R. Franco ★ 5.2k
7
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9
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1.3k
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Forum: DEG analysis when not replicates are available
NOISeq RNA-Seq edgeR
updated 18 months ago by 44k • written 4.6 years ago by ★ 5.2k
1
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0
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853
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Answer: A: LncRNA and Immune-related genes
4.6 years ago by Antonio R. Franco ★ 5.2k
0
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0
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976
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Answer: A: Dealing with only 2 samples in RNA-SEQ
4.7 years ago by Antonio R. Franco ★ 5.2k
0
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1
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976
views
Comment: C: Dealing with only 2 samples in RNA-SEQ
4.7 years ago by Antonio R. Franco ★ 5.2k
2
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0
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2.4k
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Answer: A: How to set group in EdgeR and DEseq2?
4.7 years ago by Antonio R. Franco ★ 5.2k
1
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0
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2.4k
views
Comment: C: How to set group in EdgeR and DEseq2?
4.7 years ago by Antonio R. Franco ★ 5.2k
683 results • Page 2 of 14
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