User: Mohammad Marhabaie
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- United States
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- 2 days, 16 hours ago
- 4 years, 5 months ago
Posts by Mohammad Marhabaie
Answer: A: RSEM with STAR aligment
... Use --star-gzipped-read-file instead of --gzipped-read-file ! ...
... I have done several DE analyses at gene and transcript levels using edgeR and EBSeq and I found ~30% of transcriptome (~2100 genes out of ~7000, and ~3300 transcripts out of ~11000) is depleted from my experimental samples. The total read counts for these genes is about 5 million reads (out of ~17 ...
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