User: Mohammad Marhabaie

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Location:
United States
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2 days, 16 hours ago
Joined:
4 years, 5 months ago
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m********@gmail.com

Posts by Mohammad Marhabaie

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Answer: A: RSEM with STAR aligment
... Use --star-gzipped-read-file instead of --gzipped-read-file ! ...
written 12 days ago by Mohammad Marhabaie10
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DE analysis when large portion of transcriptome is changed
... I have done several DE analyses at gene and transcript levels using edgeR and EBSeq and I found ~30% of transcriptome (~2100 genes out of ~7000, and ~3300 transcripts out of ~11000) is depleted from my experimental samples. The total read counts for these genes is about 5 million reads (out of ~17 ...
R rna-seq written 8 months ago by Mohammad Marhabaie10

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