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questions
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306
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Understanding Tumor Contamination vs. Cellularity
Cancer
purity
cnv
5 months ago by
George
▴ 10
0
votes
0
replies
280
views
Best Practices for Tumor-Only WES Data Analysis: Seeking Feedback on Variant Calling Pipeline
GATK
Mutect
WES
Cancer
5 months ago by
George
▴ 10
0
votes
0
replies
280
views
Recommended Tool for Somatic SV Discovery in Tumor-Only WES Data
SV
WES
tumor-only
6 months ago by
George
▴ 10
0
votes
2
replies
420
views
Do I Need to Filter Indels Before Annotation in GATK Funcotator?
GATK
Annotation
Funcotator
6 months ago by
George
▴ 10
3
votes
2
replies
547
views
Can I Use SureSelect v7 on Exome Data Captured with SureSelect v6?
SureSelect
hg38
WES
SV
7 months ago by
George
▴ 10
3
votes
2
replies
625
views
Clarification on Reference Version in GATK Resource Bundle
GATK
hg38
Resource
Bundle
7 months ago by
George
▴ 10
0
votes
2
replies
423
views
Seeking Opinions on Pipeline for Detecting Somatic Variants and Rare Germline Mutations
snps
germline
somatic
gatk
7 months ago by
George
▴ 10
4
votes
4
replies
835
views
Seeking Advice on Multisample Variant Calling Pipeline with BWA-MEME and GATK DRAGEN Mode
GATK
Variant-Calling
dragen
bwa
8 months ago by
George
▴ 10
0
votes
6
replies
1.4k
views
Discrepancies in Sequence Length Distribution Between Trim Galore and Trimmomatic During Adapter Trimming
fastqc
TrimGalore
multiqc
Trimmomatic
8 months ago by
George
▴ 10
1
vote
1
reply
616
views
Inconsistency in SNP detection pipelines for multi-sample analysis
vcf
bam
bcf
snps
updated 11 months ago by
LChart
4.9k • written 11 months ago by
George
▴ 10
0
votes
7
replies
1.8k
views
Issue with Merging BCF Files: Invalid INFO id Error
bcftools
updated 16 months ago by
Ram
45k • written 16 months ago by
George
▴ 10
1
vote
4
replies
1.2k
views
Efficient Bulk Data Retrieval from NCBI BioProject
ncbi
SRAtoolkit
prefetch
16 months ago by
George
▴ 10
0
votes
7
replies
1.2k
views
SNP calling with many samples using bcftools
bcftools
SNP
multithreading
16 months ago by
George
▴ 10
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