User: alebuenosm

gravatar for alebuenosm
alebuenosm20
Reputation:
20
Status:
New User
Location:
Brazil
Last seen:
4 years, 7 months ago
Joined:
5 years, 11 months ago
Email:
a*********@gmail.com

Posts by alebuenosm

<prev • 5 results • page 1 of 1 • next >
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Answer: A: Samtools 1.3 mpileup result < >
... I think the answer was already provided in [this post][1] [1]: https://www.biostars.org/p/8566/ ...
written 4.6 years ago by alebuenosm20 • updated 2.0 years ago by RamRS30k
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RNAmmer rna prediction
... High. I used the RNAmmer site to search for rRNA genes in a draft prokaryotic genome. RNAmmer found rRNA genes, but curiously they are not in a operon. The software found three 5s genes distributed in three different contigs and another 16S rRNA in another contig. This makes no sense as there must b ...
myposts written 4.6 years ago by alebuenosm20 • updated 4.6 years ago by 5heikki9.0k
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Finding genes with Glimmer3
... Hello. I Apologize if this is the wrong place to ask it.   Well. I got a draft genome ( after executing velvet and SSPACE ). Now I am running glimmer3 to find genes in it and use the information on comparative genome studies and to annotate them. The first step in running glimer is to execute the ...
myposts written 5.0 years ago by alebuenosm20 • updated 4.9 years ago by Biostar ♦♦ 20
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Answer: A: paired-reads assembly problem with so many contigs
... Thank you rtliu, I'll try it. ...
written 6.0 years ago by alebuenosm20
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paired-reads assembly problem with so many contigs
... Hi. We are assembly a genome of chromobacterium spp.  We have 2 fastq files, one Forward and other Reverse. The fastaq files are ilumina reads 300bp. What we need is to assembly these files into contigs and then generate scaffolds. The issue comes now: We used CLC bio to generate contigs and there ...
assembly written 6.0 years ago by alebuenosm20

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